Clinical Investigations and Precision Therapeutics Program, CINJ

Research Output 1976 2020

Filter
Conference article
2016
2 Citations (Scopus)

Exascale Storage Systems the SIRIUS Way

Klasky, S. A., Abbasi, H., Ainsworth, M., Choi, J., Curry, M., Kurc, T., Liu, Q., Lofstead, J., Maltzahn, C., Parashar, M., Podhorszki, N., Suchyta, E., Wang, F., Wolf, M., Chang, C. S., Churchill, M. & Ethier, S., Nov 11 2016, In : Journal of Physics: Conference Series. 759, 1, 012095.

Research output: Contribution to journalConference article

metadata
bursts
buffers
requirements
4 Citations (Scopus)

Kepler + CometCloud: Dynamic scientific workflow execution on federated cloud resources

Wang, J., AbdelBaky, M., Diaz-Montes, J., Purawat, S., Parashar, M. & Altintas, I., Jan 1 2016, In : Procedia Computer Science. 80, p. 700-711 12 p.

Research output: Contribution to journalConference article

Bioinformatics
Availability
1 Citation (Scopus)

Nonlinear hierarchical part-based regression for unconstrained face alignment

Yu, X., Lin, Z., Shaoting, Z. & Metaxas, D., Jan 1 2016, In : IJCAI International Joint Conference on Artificial Intelligence. 2016-January, p. 2711-2717 7 p.

Research output: Contribution to journalConference article

Human computer interaction
Computer vision
Artificial intelligence
Cameras
Experiments
3 Citations (Scopus)

Visual tracking with reliable memories

Shu, W., Shaoting, Z., Liu, W. & Metaxas, D., Jan 1 2016, In : IJCAI International Joint Conference on Artificial Intelligence. 2016-January, p. 3491-3497 7 p.

Research output: Contribution to journalConference article

Discrete Fourier transforms
Data storage equipment
2015
23 Citations (Scopus)

Bodypart recognition using multi-stage deep learning

Yan, Z., Zhan, Y., Peng, Z., Liao, S., Shinagawa, Y., Metaxas, D. & Zhou, X. S., Jan 1 2015, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9123, p. 449-461 13 p.

Research output: Contribution to journalConference article

Slice
Neural networks
Neural Networks
Patch
Computerized tomography
2014
28 Citations (Scopus)

Exploring Automatic, Online Failure Recovery for Scientific Applications at Extreme Scales

Gamell, M., Katz, D. S., Kolla, H., Chen, J., Klasky, S. & Parashar, M., Jan 16 2014, In : International Conference for High Performance Computing, Networking, Storage and Analysis, SC. 2015-January, January, p. 895-906 12 p., 7013060.

Research output: Contribution to journalConference article

Recovery
8 Citations (Scopus)

Mode estimation for high dimensional discrete tree graphical models

Chen, C., Liu, H., Metaxas, D. & Zhao, T., Jan 1 2014, In : Advances in Neural Information Processing Systems. 2, January, p. 1323-1331 9 p.

Research output: Contribution to journalConference article

2013
7 Citations (Scopus)

Computing the M most probable modes of a graphical model

Chen, C., Kolmogorov, V., Zhu, Y., Metaxas, D. & Lampert, C. H., Jan 1 2013, In : Journal of Machine Learning Research. 31, p. 161-169 9 p.

Research output: Contribution to journalConference article

Graphical Models
Probable
Computing
Topography
Probability distributions
2011
35 Citations (Scopus)

Deformable segmentation via sparse shape representation

Zhang, S., Zhan, Y., Dewan, M., Huang, J., Metaxas, D. & Zhou, X. S., Oct 11 2011, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6892 LNCS, PART 2, p. 451-458 8 p.

Research output: Contribution to journalConference article

Shape Representation
Segmentation
Deformable Models
Image segmentation
Liver
6 Citations (Scopus)

Investigating MapReduce framework extensions for efficient processing of geographically scattered datasets

Gadre, H., Rodero, I. & Parashar, M., Dec 21 2011, In : Performance Evaluation Review. 39, 3, p. 116-118 3 p.

Research output: Contribution to journalConference article

Scheduling algorithms
Processing
2005
21 Citations (Scopus)

An approach for intent identification by building on deception detection

Burgoon, J., Adkins, M., Kruse, J., Jensen, M. L., Meservy, T., Twitchell, D. P., Deokar, A., Nunamaker, J. F., Lu, S., Tsechpenakis, G., Metaxas, D. N. & Younger, R. E., Nov 10 2005, In : Proceedings of the Annual Hawaii International Conference on System Sciences. 1 p.

Research output: Contribution to journalConference article

Communication
127 Citations (Scopus)

Autonomic computing: An overview

Parashar, M. & Hariri, S., Oct 17 2005, In : Lecture Notes in Computer Science. 3566, p. 257-269 13 p.

Research output: Contribution to journalConference article

Autonomic Computing
Natural sciences computing
Biological systems
Software Architecture
System Architecture
3 Citations (Scopus)

Autonomic runtime manager for adaptive distributed applications

Yang, J., Chen, H., Hariri, S. & Parashar, M., Nov 10 2005, In : Proceedings of the IEEE International Symposium on High Performance Distributed Computing. p. 69-78 10 p.

Research output: Contribution to journalConference article

Managers
Life cycle
Computational complexity
Scheduling

Autonomic runtime system for large scale parallel and distributed applications

Yang, J., Chen, H., Kim, B. U., Hariri, S. & Parashar, M., Oct 17 2005, In : Lecture Notes in Computer Science. 3566, p. 297-311 15 p.

Research output: Contribution to journalConference article

Runtime Systems
Parallel Applications
Distributed Applications
Fires
Simulation
35 Citations (Scopus)

Blob analysis of the head and hands: A method for deception detection

Lu, S., Tsechpenakis, G., Metaxas, D., Jensen, M. L. & Kruse, J., Nov 10 2005, In : Proceedings of the Annual Hawaii International Conference on System Sciences. 1 p.

Research output: Contribution to journalConference article

Skin
Color
2 Citations (Scopus)

Computational modeling and simulation of heart ventricular mechanics from tagged MRI

Hu, Z., Metaxas, D. & Axel, L., Sep 27 2005, In : Lecture Notes in Computer Science. 3504, p. 369-383 15 p.

Research output: Contribution to journalConference article

Computational Simulation
Computational Modeling
Magnetic resonance imaging
Mechanics
Modeling and Simulation
4 Citations (Scopus)

Computational modeling and simulation of heart ventricular mechanics with tagged MRI

Hu, Z., Metaxas, D. & Axel, L., Dec 1 2005, In : ACM Symposium on Solid Modeling and Applications, SM. p. 79-88 10 p.

Research output: Contribution to journalConference article

Magnetic resonance imaging
Mechanics
Materials properties
Chemical activation
Tissue
3 Citations (Scopus)

Dynamic data driven coupling of continuous and discrete methods for 3D tracking

Metaxas, D. & Tsechpenakis, G., Sep 30 2005, In : Lecture Notes in Computer Science. 3515, II, p. 712-720 9 p.

Research output: Contribution to journalConference article

Data-driven
Lighting
Switches
3D shape
Time Windows
1 Citation (Scopus)

Enabling autonomic grid applications: Dynamic composition, coordination and interaction

Li, Z. & Parashar, M., Oct 17 2005, In : Lecture Notes in Computer Science. 3566, p. 270-285 16 p.

Research output: Contribution to journalConference article

Grid
Chemical analysis
Interaction
Autonomic Computing
Biological systems

Endoscopic imaging of the human vocal cords using polarization-sensitive optical coherence tomography

Pierce, M., Klein, A., Burns, J. A., Shishkov, M., Park, B. H., Tearney, G. J., Bouma, B. E., Zeitels, S. M. & De Boer, J. F., Aug 16 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5686, p. 307-309 3 p., 69.

Research output: Contribution to journalConference article

vocal cords
Vocal Cords
Optical tomography
Optical Coherence Tomography
tomography
1 Citation (Scopus)

In-vivo motion analysis of bi-ventricular hearts from tagged MR images

Park, K., Axel, L. & Metaxas, D. N., Aug 25 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5746, I, p. 184-191 8 p., 23.

Research output: Contribution to journalConference article

Magnetic resonance
magnetic resonance
Magnetic Resonance Spectroscopy
Experiments
systole
16 Citations (Scopus)

Robust segmentation of 4D cardiac MRI-tagged images via spatio-temporal propagation

Qian, Z., Huang, X., Metaxas, D. & Axel, L., Aug 25 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5746, II, p. 580-591 12 p., 68.

Research output: Contribution to journalConference article

Gabor filters
Filter banks
Magnetic resonance imaging
propagation
myocardium
2 Citations (Scopus)

Self-optimization of large scale wildfire simulations

Yang, J., Chen, H., Hariri, S. & Parashar, M., Sep 30 2005, In : Lecture Notes in Computer Science. 3514, I, p. 615-622 8 p.

Research output: Contribution to journalConference article

Self-optimization
Fires
Parallel algorithms
Simulation
Managers
4 Citations (Scopus)

Spectral-domain polarization-sensitive optical coherence tomography at 850 nm

Cense, B., Chen, T. C., Mujat, M., Joo, C., Akkin, T., Park, B. H., Pierce, M., Yun, A., Bouma, B. E., Tearaey, G. J. & De Boer, J. F., Jul 21 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5690, p. 159-162 4 p., 28.

Research output: Contribution to journalConference article

Optical tomography
Optical Coherence Tomography
Birefringence
tomography
Polarization
6 Citations (Scopus)

Towards dynamic data-driven optimization of oil well placement

Parashar, M., Matossian, V., Bangerth, W., Klie, H., Rutt, B., Kurc, T., Catalyurek, U., Saltz, J. & Wheeler, M. F., Sep 30 2005, In : Lecture Notes in Computer Science. 3515, II, p. 656-663 8 p.

Research output: Contribution to journalConference article

Oil wells
Data-driven
Placement
Reservoir management
Optimization
2004
21 Citations (Scopus)

3D cardiac anatomy reconstruction using high resolution CT data

Chen, T., Metaxas, D. & Axel, L., Dec 1 2004, In : Lecture Notes in Computer Science. 3216, PART 1, p. 411-418 8 p.

Research output: Contribution to journalConference article

Anatomy
Cardiac
High Resolution
Deformable Models
Concavity
12 Citations (Scopus)

3D facial tracking from corrupted movie sequences

Goldenstein, S., Vogler, C. & Metaxas, D., Oct 19 2004, In : Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 1

Research output: Contribution to journalConference article

Experiments
53 Citations (Scopus)
Image segmentation
Labels
Pixels
Statistical Models
25 Citations (Scopus)

A hierarchical framework for high resolution facial expression tracking

Huang, X., Zhang, S., Wang, Y., Metaxas, D. & Samaras, D., Jan 1 2004, In : IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops. 2004-January, January, 1384811.

Research output: Contribution to journalConference article

Face recognition
Muscle
Skin
Geometry
Experiments
1 Citation (Scopus)

Efficient communication strategies for distributed signal field estimation

Bajwa, W., Sayeed, A. & Nowak, R., Dec 1 2004, In : Conference Record - Asilomar Conference on Signals, Systems and Computers. 2, p. 1371-1375 5 p.

Research output: Contribution to journalConference article

Sensor networks
Communication
Sensor nodes
Wireless sensor networks
Monitoring
18 Citations (Scopus)

Extracting tissue deformation using Gabor filter banks

Montillo, A., Metaxas, D. & Axel, L., Jul 5 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5369, p. 1-9 9 p.

Research output: Contribution to journalConference article

Gabor filters
Gabor Filter
Filter Banks
Filter banks
Tissue
79 Citations (Scopus)

Human gait recognition

Zhang, R., Vogler, C. & Metaxas, D., Jan 1 2004, In : IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops. 2004-January, January, 1384807.

Research output: Contribution to journalConference article

Biped locomotion
Hidden Markov models
Feature extraction
Cameras
Trajectories
44 Citations (Scopus)

Hybrid image registration based on configural matching of scale-invariant salient region features

Huang, X., Sun, Y., Metaxas, D., Sauer, F. & Xu, C., Jan 1 2004, In : IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops. 2004-January, January, 1384966.

Research output: Contribution to journalConference article

Image registration
Antennas
1 Citation (Scopus)

In vivo depth resolved birefringence measurements of the human retinal nerve fiber layer using polarization sensitive optical coherence tomography

Cense, B., Chen, T., Park, B. H., Pierce, M. & De Boer, J. F., Oct 27 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5316, p. 291-299 9 p.

Research output: Contribution to journalConference article

nerve fibers
Optical Coherence Tomography
Optical tomography
Birefringence
Nerve
21 Citations (Scopus)

Learning coupled prior shape and appearance models for segmentation

Huang, X., Li, Z. & Metaxas, D., Dec 1 2004, In : Lecture Notes in Computer Science. 3216, PART 1, p. 60-69 10 p.

Research output: Contribution to journalConference article

Segmentation
Free-form Deformation
Splines
Principal component analysis
Textures
70 Citations (Scopus)

MetaMorphs: Deformable shape and texture models

Huang, X., Metaxas, D. & Chen, T., Oct 19 2004, In : Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 1, p. I496-I503

Research output: Contribution to journalConference article

Textures
Splines
Probability density function
Dynamic models
2 Citations (Scopus)

Outlier rejection in deformable model tracking

Goldenstein, S., Vogler, C., Stolfi, J., Pavlovic, V. & Metaxas, D., Jan 1 2004, In : IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops. 2004-January, January, 1384808.

Research output: Contribution to journalConference article

Optical flows
26 Citations (Scopus)

Pulmonary micronodule detection from 3D chest CT

Chang, S., Emoto, H., Metaxas, D. & Axel, L., Dec 1 2004, In : Lecture Notes in Computer Science. 3217, 1 PART 2, p. 821-828 8 p.

Research output: Contribution to journalConference article

Nodule
Computed Tomography
Tomography
Medical imaging
Vessel
1 Citation (Scopus)

Speckle averaging for optical coherence tomography by vibration of a thin water film

Park, B. H., Pierce, M. C., Cense, B. & De Boer, J. F., Oct 27 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5316, p. 391-396 6 p.

Research output: Contribution to journalConference article

Optical Coherence Tomography
Optical tomography
Speckle
Averaging
Vibration

Thickness and birefringence of retinal nerve fiber layer of healthy and glaucomatous subjects measured with polarization sensitive optical coherence tomography

Cense, B., Chen, T., Park, B. H., Pierce, M. & De Boer, J. F., Dec 1 2004, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5, 3, p. 179-187 9 p., 5314-36.

Research output: Contribution to journalConference article

Birefringence
nerve fibers
Optical tomography
Optical Coherence Tomography
Nerve Fibers
1 Citation (Scopus)

Ultra high-speed spectral domain optical coherence tomography of the human retina

Nassif, N. A., Cense, B., Park, B. H., Pierce, M., Bouma, B., Tearney, G. J. & De Boer, J. F., Oct 27 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5316, p. 233-235 3 p.

Research output: Contribution to journalConference article

Optical Coherence Tomography
Retina
retina
Optical tomography
Signal to noise ratio
2003
6 Citations (Scopus)

Burn depth determination in human skin using polarization-sensitive optical coherence tomography

Pierce, M. C., Sheridan, R. L., Park, B. H., Cense, B. & De Boer, J. F., Dec 5 2003, In : Proceedings of SPIE - The International Society for Optical Engineering. 4956, p. 263-270 8 p.

Research output: Contribution to journalConference article

Optical Coherence Tomography
Optical tomography
Birefringence
Skin
Polarization
32 Citations (Scopus)

Establishing local correspondences towards compact representations of anatomical structures

Huang, X., Paragios, N. & Metaxas, D., Dec 1 2003, In : Lecture Notes in Computer Science. 2879, PART 2, p. 926-934 9 p.

Research output: Contribution to journalConference article

Correspondence
Registration
Variational techniques
Computer aided diagnosis
Free-form Deformation
18 Citations (Scopus)

Gibbs prior models, marching cubes, and deformable models: A hybrid framework for 3D medical image segmentation

Chen, T. & Metaxas, D., Dec 1 2003, In : Lecture Notes in Computer Science. 2879, PART 2, p. 703-710 8 p.

Research output: Contribution to journalConference article

Marching Cubes
Deformable Models
3D Image
Medical Image
Image segmentation

Hybrid segmentation framework for 3D medical image analysis

Chen, T. & Metaxas, D., Sep 15 2003, In : Proceedings of SPIE - The International Society for Optical Engineering. 5032 III, p. 1421-1432 12 p.

Research output: Contribution to journalConference article

Medical Image Analysis
3D Image
image analysis
Image analysis
Segmentation
29 Citations (Scopus)

Interaction between noise suppression and inhomogeneity correction in MRI

Montillo, A., Udupa, J., Axel, L. & Metaxas, D., Sep 15 2003, In : Proceedings of SPIE - The International Society for Optical Engineering. 5032 II, p. 1025-1036 12 p.

Research output: Contribution to journalConference article

Noise Suppression
Inhomogeneity
Magnetic resonance imaging
Thermal noise
inhomogeneity
4 Citations (Scopus)

Optimal Feature Combination for Automated Segmentation of Prostatic Adenocarcinoma from High Resolution MRI

Madabhushi, A., Feldman, M., Metaxas, D., Chute, D. & Tomaszeweski, J., Dec 1 2003, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 1, p. 614-617 4 p.

Research output: Contribution to journalConference article

Magnetic resonance imaging
Adenocarcinoma
Textures
Cost functions
Feature extraction
11 Citations (Scopus)

Optimizing Web servers using Page rank prefetching for clustered accesses

Safronov, V. & Parashar, M., Apr 1 2003, In : Information Sciences. 150, 3-4, p. 165-176 12 p.

Research output: Contribution to journalConference article

Prefetching
PageRank
Web Server
Servers
Websites

Real-time multi-functional optical coherence tomography

Park, B. H., Pierce, M., Cense, B. & De Boer, J. F., Dec 5 2003, In : Proceedings of SPIE - The International Society for Optical Engineering. 4956, p. 179-186 8 p.

Research output: Contribution to journalConference article

Optical Coherence Tomography
Optical tomography
tomography
Display devices
Real-time
10 Citations (Scopus)

Scan-conversion algorithm for ridge point detection on tubular objects

Chang, S., Metaxas, D. & Axel, L., Dec 1 2003, In : Lecture Notes in Computer Science. 2879, PART 2, p. 158-165 8 p.

Research output: Contribution to journalConference article

Ridge
Skeleton
Gradient Vector Flow
Blood vessels
Medical imaging