Genomic Instability and Cancer Genetics Program, CINJ

Research Output 1974 2019

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2018

Cancer of the Colon

Libutti, S., Saltz, L. B., Willett, C. G. & Levine, R. A., Nov 16 2018, DeVita, Hellman, and Rosenberg's Cancer: Principles & Practice of Oncology. Wolters Kluwer Health Pharma Solutions (Europe) Ltd, p. 918-970 53 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Colonic Neoplasms
2017
2 Citations (Scopus)

Polyadenylation site-based analysis of transcript expression by 3′READS+

Zheng, D. & Tian, B., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 65-77 13 p. (Methods in Molecular Biology; vol. 1648).

Research output: Chapter in Book/Report/Conference proceedingChapter

Polyadenylation
Gene Expression Profiling
Ligation
High-Throughput Nucleotide Sequencing
Messenger RNA

The translationally controlled tumor protein and the cellular response to ionizing radiation-induced DNA damage

Zhang, J., Shim, G., de Toledo, S. M. & Azzam, E., Jan 1 2017, Results and Problems in Cell Differentiation. Springer Verlag, p. 227-253 27 p. (Results and Problems in Cell Differentiation; vol. 64).

Research output: Chapter in Book/Report/Conference proceedingChapter

Ionizing Radiation
DNA Damage
DNA
DNA End-Joining Repair
Double-Stranded DNA Breaks
2015
2 Citations (Scopus)

Cancer of the colon

Libutti, S., Saltz, L. B., Willett, C. G. & Levine, R. A., Jan 7 2015, DeVita, Hellman, and Rosenberg's Cancer: Principles & Practice of Oncology: Tenth Edition. Wolters Kluwer Health Adis (ESP)

Research output: Chapter in Book/Report/Conference proceedingChapter

Colonic Neoplasms

Cancer of the rectum

Libutti, S., Willett, C. G., Saltz, L. B. & Levine, R. A., Jan 7 2015, DeVita, Hellman, and Rosenberg's Cancer: Principles & Practice of Oncology: Tenth Edition. Wolters Kluwer Health Adis (ESP)

Research output: Chapter in Book/Report/Conference proceedingChapter

Rectal Neoplasms
2014
13 Citations (Scopus)

Accurate mapping of cleavage and polyadenylation sites by 3′ region extraction and deep sequencing

Hoque, M., Li, W. & Tian, B., Jan 1 2014, Methods in Molecular Biology. Humana Press Inc., p. 119-129 11 p. (Methods in Molecular Biology; vol. 1125).

Research output: Chapter in Book/Report/Conference proceedingChapter

High-Throughput Nucleotide Sequencing
Polyadenylation
RNA
Gene Expression
Reverse Transcription
2013

Ethnic differences in fertility and assisted reproduction: Ethnic disparity in stem cell availability and research

Lu, C-W., Seita, Y., Treff, N. & Roth, M., Mar 1 2013, Ethnic Differences in Fertility and Assisted Reproduction. Springer New York, p. 213-226 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Stem Cell Research
Pluripotent Stem Cells
Reproduction
Fertility
Stem Cells
2 Citations (Scopus)

Helicase unwinding at the replication fork

Nandakumar, D. & Patel, S., Jan 1 2013, Molecular Biophysics for the Life Sciences. Springer New York, p. 291-312 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nucleoside-Triphosphatase
DNA Primase
Bacteriophage T7
DNA-binding proteins
DNA-directed DNA polymerase

Revisiting mutagenesis in the age of high-throughput sequencing

De, S. & Ward, R. M., Nov 1 2013, Stress-Induced Mutagenesis. Springer New York, p. 257-270 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mutagenesis
Throughput
Technology
Biological Phenomena
Microbiology
7 Citations (Scopus)

The ionizing radiation-induced bystander effect: Evidence, mechanism, and significance

Azzam, E., De Toledo, S. M., Harris, A., Ivanov, V., Zhou, H., Amundson, S. A., Lieberman, H. B. & Hei, T. K., Jan 1 2013, Pathobiology of Cancer Regimen-Related Toxicities. Springer New York, p. 35-61 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bystander Effect
Ionizing Radiation
Second Primary Neoplasms
Gap Junctions
DNA Repair
2009
9 Citations (Scopus)

Model-based global analysis of heterogeneous experimental data using gfit

Levin, M. K., Hingorani, M. M., Holmes, R. M., Patel, S. & Carson, J. H., Dec 1 2009, Systems Biology. Maly, I. (ed.). 1 ed. p. 335-359 25 p. (Methods in Molecular Biology; vol. 500, no. 1).

Research output: Chapter in Book/Report/Conference proceedingChapter

Regression Analysis
Information Systems
Software
Datasets
2 Citations (Scopus)

Viral helicases

Rajagopal, V. & Patel, S., Jan 1 2009, Viral Genome Replication. Springer US, p. 429-466 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nucleic Acids
Recombinational DNA Repair
Chromatin Assembly and Disassembly
Protein Biosynthesis
Hydrolysis
2008
13 Citations (Scopus)

Identification of mRNA Polyadenylation Sites in Genomes Using cDNA Sequences, Expressed Sequence Tags, and Trace

Lee, J. Y., Park, J. Y. & Tian, B., Dec 1 2008, Post-Transcriptional Gene Regulation. Wilusz, J. (ed.). p. 23-37 15 p. (Methods in Molecular Biology; vol. 419).

Research output: Chapter in Book/Report/Conference proceedingChapter

Polyadenylation
Expressed Sequence Tags
Poly A
Complementary DNA
Genome
3 Citations (Scopus)

Tumor Suppressor Genes

Levine, A. J., Hu, W. & Feng, Z., Dec 1 2008, The Molecular Basis of Cancer. Elsevier Inc., p. 31-38 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tumor Suppressor Genes
2007
10 Citations (Scopus)

Cancer Development and Progression

He, M., Rosen, J., Mangiameli, D. & Libutti, S., Jan 1 2007, Microarray Technology and Cancer Gene Profiling. Springer New York, p. 117-133 17 p. (Advances in Experimental Medicine and Biology; vol. 593).

Research output: Chapter in Book/Report/Conference proceedingChapter

Microarrays
Laser Capture Microdissection
Technology
Neoplasms
Comparative Genomic Hybridization

High-throughput genotyping of single nucleotide polymorphisms with high sensitivity

Li, H., Wang, H. Y., Cui, X., Luo, M., Hu, G., Greenawalt, D. M., Tereshchenko, I. V., Li, J. Y., Chu, Y. & Gao, R., Nov 1 2007, Comparative Genomics. Nicholas, B. H. (ed.). p. 281-294 14 p. (Methods in Molecular Biology; vol. 396).

Research output: Chapter in Book/Report/Conference proceedingChapter

Single Nucleotide Polymorphism
Single-Stranded DNA
Polymerase Chain Reaction
Haploidy
Genetic Markers
2001

Assays for retroviral RNase H

Snyder, C. S. & Roth, M., Jan 1 2001, Methods in Enzymology. Academic Press Inc., p. 440-452 13 p. (Methods in Enzymology; vol. 341).

Research output: Chapter in Book/Report/Conference proceedingChapter

Ribonuclease H
Assays