School of Arts and Sciences, Chemistry & Chemical Biology

2024

Biophysical reviews Special issue call: The 21st IUPAB Congress 2024 Kyoto Japan

Olson, W. K. & Hall, D., Feb 2024, In: Biophysical Reviews. 16, 1, p. 9-10 2 p.

Research output: Contribution to journal › Comment/debate › peer-review

Folding paper models of biostructures for outreach and education

Goodsell, D. S., Dutta, S., Hudson, B. P., Voigt, M., Burley, S. K. & Zardecki, C., Feb 9 2024, In: Patterns. 5, 2, 100931.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

2023

An open call for contributions to a special issue of Biophysical Reviews focused on multiscale simulations of DNA from electrons to nucleosomes

Olson, W. K., Maddocks, J. H., Dans, P. D., Cheatham, T. H., Harris, S., Laughton, C., Orozco, M. & Pollack, L., Dec 2023, In: Biophysical Reviews. 15, 6, p. 1901-1902 2 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

2 Scopus citations

Author Correction: Membrane curvature governs the distribution of Piezo1 in live cells (Nature Communications, (2022), 13, 1, (7467), 10.1038/s41467-022-35034-6)

Yang, S., Miao, X., Arnold, S., Li, B., Ly, A. T., Wang, H., Wang, M., Guo, X., Pathak, M. M., Zhao, W., Cox, C. D. & Shi, Z., Dec 2023, In: Nature communications. 14, 1, 524.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

1 Scopus citations

Commentary on “Different Ways to Die: Cell Death Pathways and Their Association With Spinal Cord Injury”

Luo, J., Stein, J. B. & Lee, K. B., Jun 2023, In: Neurospine. 20, 2, p. 449-450 2 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

Corrigendum to “Advanced theragnostics for the central nervous system (CNS) and neurological disorders using functional inorganic nanomaterials” [Adv. Drug Delivery Rev. 192 (2023) 114636](S0169409X22005269)(10.1016/j.addr.2022.114636)

Conklin, B., Conley, B. M., Hou, Y., Chen, M. & Lee, K. B., Apr 2023, In: Advanced Drug Delivery Reviews. 195, 114732.

Research output: Contribution to journal › Comment/debate › peer-review

Corrigendum to “Computational design of nanomolar-binding antibodies specific to multiple SARS-CoV-2 variants by engineering a specificity switch of antibody 80R using RosettaAntibodyDesign (RAbD) results in potential generalizable therapeutic antibodies for novel SARS-CoV-2 virus” [Heliyon 9(4) (April 2023) e15032] (Heliyon (2023) 9(4), (S2405844023022399), (10.1016/j.heliyon.2023.e15032))

Hernandez, N. E., Jankowski, W., Frick, R., Kelow, S. P., Lubin, J. H., Simhadri, V., Adolf-Bryfogle, J., Khare, S. D., Dunbrack, R. L., Gray, J. J. & Sauna, Z. E., Aug 2023, In: Heliyon. 9, 8, e17901.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

1 Scopus citations

The next decade in structural biology

Walsh, M. A., Nannenga, B. L., Gonen, T., Sexton, P. M., Wootten, D., Chiu, W., Sun, F., Carragher, B., Potter, C. S., Agard, D. & Burley, S. K., Nov 2 2023, In: Structure. 31, 11, p. 1284-1288 5 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

2022

Editors’ roundup: October 2022

Olson, W., He, R., Benedetto, A., Iskratsch, T., Shaitan, K. & Hall, D., Oct 2022, In: Biophysical Reviews. 14, 5, p. 1085-1091 7 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

6 Scopus citations

Erratum: Strongly emissive white-light-emitting silver iodide based inorganic-organic hybrid structures with comparable quantum efficiency to commercial phosphors (Chemical Communications (2020) 56 (1481-1484) DOI: 10.1039/C9CC09260A)

Lin, F., Liu, W., Wang, H. & Li, J., May 26 2022, In: Chemical Communications. 58, 46, p. 6669 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

Flexible hydrogen-bonded organic framework to split ethane and ethylene

Xie, F., Wang, H. & Li, J., Aug 3 2022, In: Matter. 5, 8, p. 2516-2518 3 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

12 Scopus citations

2021

Erratum: Poison or promoter? Investigating the dual-role of carbon monoxide in pincer-iridium-based alkane dehydrogenation systems via operando diffuse reflectance infrared fourier transform spectroscopy (ACS Catalysis (2020) 10:21 (12425-12436) DOI: 10.1021/acscatal.0c02406)

Sheludko, B., Castro, C. F., Goldman, A. S. & Celik, F. E., Apr 2 2021, In: ACS Catalysis. 11, 7, p. 4294 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

Erratum: High-performance macromolecular data delivery and visualization for the web (Acta Cryst. D76 (1167–1173) DOI: 10.1107/S2059798320014515)

Sehnal, D., Svobodová, R., Berka, K., Rose, A. S., Burley, S. K., Velankar, S. & Koca, J., Jan 1 2021, In: Acta Crystallographica Section D: Structural Biology. 77, p. 126 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

Erratum: Measured and simulated thermoelectric properties of FeAs_2-xSe_x(x = 0.30-1.0): From marcasite to arsenopyrite structure (Mater. Adv. (2020) 1 (1390-1398) DOI: 10.1039/D0MA00371A)

Perez, C. J., Devlin, K. P., Skaggs, C. M., Tan, X., Frank, C. E., Badger, J. R., Kang, C. J., Emge, T. J., Kauzlarich, S. M., Taufour, V., Kotliar, G., Lapidus, S. H. & Greenblatt, M., May 7 2021, In: Materials Advances. 2, 9, p. 3119-3120 2 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

Synergies between the Protein Data Bank and the community

Berman, H. M., May 2021, In: Nature Structural and Molecular Biology. 28, 5, p. 400-401 2 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

7 Scopus citations

2020

Biophysical Reviews’ “Meet the Editors Series”—a profile of Wilma K. Olson

Olson, W. K., Feb 1 2020, In: Biophysical Reviews. 12, 1, p. 9-12 4 p.

Research output: Contribution to journal › Comment/debate › peer-review

8 Scopus citations

Corrigendum: Use of Human Dental Pulp and Endothelial Cell Seeded Tyrosine-Derived Polycarbonate Scaffolds for Robust in vivo Alveolar Jaw Bone Regeneration (Front. Bioeng. Biotechnol, (2020), 8, (796), 10.3389/fbioe.2020.00796)

Zhang, W., Saxena, S., Fakhrzadeh, A., Rudolph, S., Young, S., Kohn, J. & Yelick, P. C., Nov 17 2020, In: Frontiers in Bioengineering and Biotechnology. 8, 608275.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

11 Scopus citations

How to help the free market fight coronavirus

Burley, S. K., Apr 1 2020, In: Nature. 580, 7802, p. 167 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

8 Scopus citations

ROAMing in mutable voids: Polymer free volumes from wobbling vibrational probes

Castner, E. W., Jul 7 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 27, p. 15385-15387 3 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

2 Scopus citations

2019

Correction: Unraveling the structural and chemical features of biological short hydrogen bonds (Chemical Science(2019) DOI: 10.1039/c9sc01496a)

Zhou, S. & Wang, L., 2019, In: Chemical Science. 10, 34, p. 8046 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

Erratum: Polar molecules catalyze CO insertion into metal-alkyl bonds through the displacement of an agostic C-H bond (Proceedings of the National Academy of Sciences of the United States of America (2019) 116 (3419-3424) DOI: 10.1073/pnas.1816339116)

Zhou, T., Malakar, S., Webb, S. L., Krogh-Jespersen, K. & Goldman, A. S., Nov 26 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 48, p. 24373 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

Playing the long game wins the cohesion–adhesion rivalry

Remsing, R. C., Nov 26 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 48, p. 23874-23876 3 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

7 Scopus citations

2018

Erratum: Evaluating the in vivo glial response to miniaturized parylene cortical probes coated with an ultra-fast degrading polymer to aid insertion (Journal of Neural Engineering (2018) 15 (036002) DOI: 10.1088/1741-2552/aa9fad)

Lo, M. C., Wang, S., Singh, S., Damodaran, V. B., Ahmed, I., Coffey, K., Barker, D., Saste, K., Kals, K., Kaplan, H. M., Kohn, J., Shreiber, D. I. & Zahn, J. D., Jun 6 2018, In: Journal of neural engineering. 15, 4, 049601.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

2017

Catalysis in MOFs: General discussion

Carraro, F., Chapman, K., Chen, Z., Dincǎ, M., Easun, T., Eddaoudi, M., Farha, O., Forgan, R., Gagliardi, L., Haase, F., Harris, D., Kitagawa, S., Knichal, J., Lamberti, C., Lee, J. S. M., Leus, K., Li, J., Lin, W., Lloyd, G. & Long, J. R. & 15 others, Lu, C., Ma, S., McHugh, L., Perez, J. P. H., Ranocchiari, M., Rosi, N., Rosseinsky, M., Ryder, M. R., Ting, V., Van Der Veen, M., Van Der Voort, P., Volkmer, D., Walsh, A., Woods, D. & Yaghi, O. M., 2017, In: Faraday Discussions. 201, p. 369-394 26 p.

Research output: Contribution to journal › Comment/debate › peer-review

14 Scopus citations

Electronic, magnetic and photophysical properties of MOFs and COFs: General discussion

Banerjee, T., Bennett, T., Butler, K., Easun, T. L., Eddaoudi, M., Forgan, R., Gagliardi, L., Hendon, C., Jorge, M., Lamberti, C., Lee, J. S. M., Leus, K., Li, J., Lin, W., Ranocchiari, M., Rosi, N., Santaclara, J. G., Shevlin, S., Svane, K. & Ting, V. & 6 others, Van Der Veen, M., Van Der Voort, P., Walsh, A., Woods, D., Yaghi, O. M. & Zhu, G., 2017, In: Faraday Discussions. 201, p. 87-99 13 p.

Research output: Contribution to journal › Comment/debate › peer-review

11 Scopus citations

Erratum to: Lessons learned from comparing molecular dynamics engines on the SAMPL5 dataset (Journal of Computer-Aided Molecular Design, (2017), 31, 1, (147-161), 10.1007/s10822-016-9977-1)

Shirts, M. R., Klein, C., Swails, J. M., Yin, J., Gilson, M. K., Mobley, D. L., Case, D. A. & Zhong, E. D., Aug 1 2017, In: Journal of Computer-Aided Molecular Design. 31, 8, p. 777 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

4 Scopus citations

MOFs modeling and theory: General discussion

Addicoat, M., Butler, K., Farha, O., Gagliardi, L., Hajiahmadi Farmahini, A., Hendon, C., Jorge, M., Kitagawa, S., Lamberti, C., Lee, J. S. M., Li, J., Liu, X., Moggach, S., Ranocchiari, M., Sarkisov, L., Shevlin, S., Stassen, I., Svane, K., Volkmer, D. & Walsh, A. & 2 others, Wilmer, C. & Yaghi, O. M., 2017, In: Faraday Discussions. 201, p. 233-245 13 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

3 Scopus citations

New directions in gas sorption and separation with MOFs: General discussion

Addicoat, M., Bennett, T., Chapman, K., Denysenko, D., Dincǎ, M., Doan, H., Easun, T., Eddaoudi, M., Farha, O., Gagliardi, L., Haase, F., Hajiahmadi Farmahini, A., Hendon, C., Jorge, M., Kitagawa, S., Lamberti, C., Lee, J. S. M., Leus, K., Li, J. & Lin, W. & 16 others, Liu, X., Lloyd, G., Lu, C., Ma, S., Perez, J. P. H., Ranocchiari, M., Rosi, N., Stassen, I., Ting, V., Van Der Veen, M., Van Der Voort, P., Vande Velde, C. M. L., Volkmer, D., Vornholt, S., Walsh, A. & Yaghi, O. M., 2017, In: Faraday Discussions. 201, p. 175-194 20 p.

Research output: Contribution to journal › Comment/debate › peer-review

8 Scopus citations

2016

Electrocatalysis: Overall Water Splitting Catalyzed Efficiently by an Ultrathin Nanosheet-Built, Hollow Ni₃S₂-Based Electrocatalyst (Adv. Funct. Mater. 27/2016)

Wu, Y., Li, G. D., Liu, Y., Yang, L., Lian, X., Asefa, T. & Zou, X., Jul 19 2016, In: Advanced Functional Materials. 26, 27, p. 4999 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

12 Scopus citations

Erratum: Mn₂FeWO₆: A New Ni₃TeO₆-Type Polar and Magnetic Oxide (Advanced Materials (2015) 27 (2177) DOI 10.1002/adma.201405244)

Li, M. R., Croft, M., Stephens, P. W., Ye, M., Vanderbilt, D., Retuerto, M., Deng, Z., Grams, C. P., Hemberger, J., Hadermann, J., Li, W. M., Jin, C. Q., Saouma, F. O., Jang, J. I., Akamatsu, H., Gopalan, V., Walker, D. & Greenblatt, M., Mar 16 2016, In: Advanced Materials. 28, 11, p. 2098 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

1 Scopus citations

Frontispiece: Low-Temperature Cationic Rearrangement in a Bulk Metal Oxide

Li, M. R., Retuerto, M., Stephens, P. W., Croft, M., Sheptyakov, D., Pomjakushin, V., Deng, Z., Akamatsu, H., Gopalan, V., Sánchez-Benítez, J., Saouma, F. O., Jang, J. I., Walker, D. & Greenblatt, M., Aug 16 2016, In: Angewandte Chemie - International Edition. 55, 34

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

2015

Erratum: (+)-SJ733, a clinical candidate for malaria that acts through ATP4 to induce rapid host-mediated clearance of Plasmodium (Proceedings of the National Academy of Sciences of the United States of America (2014) 111 (E5455-E5462) 1 DOI: 10.1073/pnas.1414221111)

Jiménez-Díaz, M. B., Ebert, D., Salinas, Y., Pradhan, A., Lehane, A. M., Myrand-Lapierre, M. E., O'Loughlin, K. G., Shackleford, D. M., De Almeida, M. J., Carrillo, A. K., Clark, J. A., Dennis, A. S. M., Diep, J., Deng, X., Duffy, S., Endsley, A. N., Fedewa, G., Guiguemde, W. A., Gómez, M. G. & Holbrook, G. & 30 others, Horst, J., Kim, C. C., Liu, J., Lee, M. C. S., Matheny, A., SantosMartínez, M., Miller, G., Rodríguez-Alejandre, A., Sanz, L., Sigal, M., Spillman, N. J., Stein, P. D., Wang, Z., Zhu, F., Waterson, D., Knapp, S., Shelat, A., Avery, V. M., Fidock, D. A., Gamo, F. J., Charman, S. A., Mirsalis, J. C., Ma, H., Ferrer, S., Kirk, K., Angulo-Barturen, I., Kyle, D. E., De Risi, J. L., Floyd, D. M. & Guy, R. K., Oct 20 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 42, p. E5764

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

2 Scopus citations

Erratum: Synthetic metallochaperone ZMC1 rescues mutant p53 conformation by transporting zinc into cells as an ionophore (Molecular Pharmacology (2015) 87 (825-831))

Blanden, R., Yu, X., Aaron, J. W., Gilleran, J. A., Augeri, D. J., O'Dell, R. S., Olson, E. C., Kimball, S. D., Emge, T. J., Movileanu, L., Carpizo, D. R. & Loh, S. N., Dec 1 2015, In: Molecular pharmacology. 88, 6, p. 1084 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

4 Scopus citations

Erratum to Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch [(Cell Reports 11, 1-12; March 26, 2015)]

Ren, A., Wang, X. C., Kellenberger, C. A., Rajashankar, K. R., Jones, R. A., Hammond, M. C. & Patel, D. J., Apr 28 2015, In: Cell Reports. 11, 4, p. 671 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

1 Scopus citations

2014

Erratum: Impact of bulge loop size on DNA triplet repeat domains: Implications for DNA repair and expansion. Biopolymers 101(1), 1-12, (2014)

Volker, J., Plum, G. E., Gindikin, V., Klump, H. H. & Breslauer, K. J., Apr 2014, In: Biopolymers. 101, 4, p. 439 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

1 Scopus citations

Erratum: Quantum mechanical study of solvent effects in a prototype S _N2 reaction in solution: Cl^- attack on CH₃Cl (Journal of Chemical Physics (2014) 140 (054109))

Kuechler, E. R. & York, D. M., Mar 7 2014, In: Journal of Chemical Physics. 140, 9, 099901.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

2013

Can nucleosomal DNA be described by an elastic model?. Comment on "Sequence-dependent collective properties of DNAs and their role in biological systems" by Pasquale De Santis and Anita Scipioni.

Zhurkin, V. B. & Olson, W. K., Mar 2013, In: Physics of Life Reviews. 10, 1, p. 70-72 3 p.

Research output: Contribution to journal › Comment/debate › peer-review

4 Scopus citations

Erratum: High magnetic ordering temperature in the perovskites Sr _4-xLa_xFe₃ReO₁₂ (x=0.0, 1.0, 2.0) (Journal of Solid State Chemistry (2012) 194 (48-58) DOI: 10.1016/j.jssc.2012. 06.031)

Retuerto, M., Li, M. R., Go, Y. B., Ignatov, A., Croft, M., Ramanujachary, K. V., Herber, R. H., Nowik, I., Hodges, J. P., Dachraoui, W., Hadermann, J. & Greenblatt, M., Feb 2013, In: Journal of Solid State Chemistry. 198, p. 246 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

2011

Erratum: Structure of the CAP-DNA complex at 2.5 Å resolution: A complete picture of the protein-DNA Interface (Journal of Molecular Biology (1996) 260:3 (395-408))

Parkinson, G., Wilson, C., Gunasekera, A., Ebright, Y. W., Ebright, R. H. & Berman, H. M., Nov 18 2011, In: Journal of molecular biology. 414, 1, p. 163 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

2 Scopus citations

The evolution of the Protein Data Bank

Berman, H. M., Dec 2011, In: Nature Structural and Molecular Biology. 18, 12, p. 1310 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

2 Scopus citations

2010

Erratum: A low band gap iron sulfide hybrid semiconductor with unique 2D [Fe₁₆S₂0]^8- layer and reduced thermal conductivity (Chemical Communications (2010) 46 (1649-1651) DOI: 10.1039/b920118a)

Wu, M., Rhee, J., Emge, T. J., Yao, H., Cheng, J. H., Thiagarajan, S., Croft, M., Yang, R. & Li, J., Dec 28 2010, In: Chemical Communications. 46, 48, p. 9261 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

2009

Entrapping cinchona alkaloids within metals: Chirally imprinted palladium

Asefa, T., 2009, In: Chemtracts. 22, 4, p. 121-128 8 p.

Research output: Contribution to journal › Comment/debate › peer-review

2008

Harnessing Knowledge from Structural Genomics

Berman, H. M., Jan 8 2008, In: Structure. 16, 1, p. 16-18 3 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

4 Scopus citations

2004

Erratum: Homogeneity field and magnetoresistance of the Ca(Mn,Cu) ₇O₁₂ solid solution prepared in oxygen (journal of Materials Chemistry (2004) 14 (1150-1156) DOI: 10.1039/b31357e)

Pomerantseva, E. A., Itkis, D. M., Goodilin, E. A., Noudem, J. G., Lobanov, M. V., Greenblatt, M. & Tretyakov, Y. D., Apr 21 2004, In: Journal of Materials Chemistry. 14, 8, p. 1352 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

2000

Erratum: 'High-resolution calorimetric and optical melting profiles of DNA plasmids: Resolving contributions from intrinsic melting domains and specifically designed inserts,' (Biopolymers (1999) 50:3 (303-318))

Volker, J., Blake, R. D., Delcourt, S. G. & Breslauer, K. J., 2000, In: Biopolymers. 53, 1, p. 112 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

Smith et al. reply

Smith, K. E., Xue, J., Duda, L. C., Fedorov, A. V., Johnson, P. D., McCarroll, W. & Greenblatt, M., 2000, In: Physical review letters. 85, 18, p. 3986 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

9 Scopus citations

1996

Erratum to: Flexing and folding double helical DNA (Biophys. Chem., 55 (1995) 7-29) (BIOCHE1986)

Olson, W. K., Babcock, M. S., Gorin, A., Liu, G., Marky, N. L., Martino, J. A., Pedersen, S. C., Srinivasan, A. R., Tobias, I., Westcott, T. P. & Zhang, P., 1996, In: Biophysical chemistry. 60, 3, p. 155 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

1995