School of Health Professions, Biomedical Informatics

Research Output 1983 2020

2020

The Convergence Insufficiency Neuro-mechanism in Adult Population Study (CINAPS) Randomized Clinical Trial: Design, Methods, and Clinical Data

Alvarez, T. L., Scheiman, M., Santos, E. M., Morales, C., Yaramothu, C., D’Antonio-Bertagnolli, J. V., Biswal, B. B., Gohel, S. & Li, X., Jan 2 2020, In : Ophthalmic Epidemiology. 27, 1, p. 52-72 21 p.

Research output: Contribution to journalArticle

Ocular Motility Disorders
Randomized Controlled Trials
Strabismus
Population
Vision Disparity
2019
2 Citations (Scopus)
Open Access
High-Throughput Nucleotide Sequencing
Libraries
Noise
Mutation
Research

Early childhood network alterations in severe autism

Kaku, S. M., Jayashankar, A., Girimaji, S. C., Bansal, S., Gohel, S., Bharath, R. D. & Srinath, S., Jan 1 2019, In : Asian Journal of Psychiatry. 39, p. 114-119 6 p.

Research output: Contribution to journalArticle

Autistic Disorder
Cluster Analysis
Auditory Cortex
Brain
Language

Heat Strain Decision Aid (HSDA) accurately predicts individual-based core body temperature rise while wearing chemical protective clothing

Potter, A. W., Hunt, A. P., Cadarette, B. S., Fogarty, A., Srinivasan, S., Santee, W. R., Blanchard, L. A. & Looney, D. P., Apr 2019, In : Computers in Biology and Medicine. 107, p. 131-136 6 p.

Research output: Contribution to journalArticle

Open Access
Protective Clothing
Protective clothing
Decision Support Techniques
Body Temperature
Hot Temperature
Open Access
Chemotherapy
adenocarcinoma
drug therapy
lungs
Drug Therapy

Physician Review of a Celiac Disease Risk Estimation and Decision-Making Expert System

Pastore, R. L., Murray, J. A., Coffman, F. D., Mitrofanova, A. & Srinivasan, S., Nov 17 2019, In : Journal of the American College of Nutrition. 38, 8, p. 722-728 7 p.

Research output: Contribution to journalArticle

Expert Systems
Clinical Decision Support Systems
Celiac Disease
Decision Making
Physicians
Open Access
Neurosciences
Cues
Respiration
Occipital Lobe
varespladib methyl
1 Citation (Scopus)

Resting-state functional connectivity of the middle frontal gyrus can predict language lateralization in patients with brain tumors

Gohel, S., Laino, M. E., Rajeev-Kumar, G., Jenabi, M., Peck, K., Hatzoglou, V., Tabar, V., Holodny, A. I. & Vachha, B., Feb 1 2019, In : American Journal of Neuroradiology. 40, 2, p. 319-325 7 p.

Research output: Contribution to journalArticle

Brain Neoplasms
Language
Magnetic Resonance Imaging
Aptitude
Neoplasms
6 Citations (Scopus)

Targeted RNA-sequencing for the quantification of measurable residual disease in acute myeloid leukemia

Dillon, L. W., Hayati, S., Roloff, G. W., Tunc, I., Pirooznia, M., Mitrofanova, A. & Hourigan, C. S., Jan 31 2019, In : Haematologica. 104, 2, p. 297-304 8 p.

Research output: Contribution to journalArticle

RNA Sequence Analysis
Acute Myeloid Leukemia
Computational Biology
Limit of Detection
Recurrence
2018
5 Citations (Scopus)

Age and HIV effects on resting state of the brain in relationship to neurocognitive functioning

Egbert, A. R., Biswal, B., Karunakaran, K., Gohel, S., Pluta, A., Wolak, T., Szymańska, B., Firląg-Burkacka, E., Sobańska, M., Gawron, N., Bieńkowski, P., Sienkiewicz-Jarosz, H., Ścińska-Bieńkowska, A., Bornstein, R., Rao, S. & Łojek, E., May 15 2018, In : Behavioural Brain Research. 344, p. 20-27 8 p.

Research output: Contribution to journalArticle

HIV
Brain
Prefrontal Cortex
HIV Seropositivity
Occipital Lobe
3 Citations (Scopus)

Cooperation of loss of NKX3.1 and inflammation in prostate cancer initiation

Le Magnen, C., Virk, R. K., Dutta, A., Kim, J. Y., Panja, S., Lopez-Bujanda, Z. A., Califano, A., Drake, C. G., Mitrofanova, A. & Abate-Shen, C., Nov 2018, In : DMM Disease Models and Mechanisms. 11, 11

Research output: Contribution to journalArticle

Prostate
Prostatic Neoplasms
Genes
Inflammation
Tumors
6 Citations (Scopus)

Differential associations of combined vs. isolated cannabis and nicotine on brain resting state networks

Filbey, F. M., Gohel, S., Prashad, S. & Biswal, B. B., Sep 1 2018, In : Brain Structure and Function. 223, 7, p. 3317-3326 10 p.

Research output: Contribution to journalArticle

Cannabis
Nicotine
Brain
Occipital Lobe
Parietal Lobe
6 Citations (Scopus)

Differential requirements of androgen receptor in luminal progenitors during prostate regeneration and tumor initiation

Chua, C. W., Epsi, N. J., Leung, E. Y., Xuan, S., Lei, M., Li, B. I., Bergren, S. K., Hibshoosh, H., Mitrofanova, A. & Shen, M. M., Jan 15 2018, In : eLife. 7, e28768.

Research output: Contribution to journalArticle

Androgen Receptors
Tumors
Prostate
Regeneration
Stem Cells

Differential requirements of androgen receptor in luminal progenitors during prostate regeneration and tumor initiation

Chua, C. W., Epsi, N. J., Leung, E. Y., Xuan, S., Lei, M., Li, B. I., Bergren, S. K., Hibshoosh, H., Mitrofanova, A. & Shen, M. M., Jan 15 2018, In : eLife. 7, e28768.

Research output: Contribution to journalArticle

Androgen Receptors
Tumors
Prostate
Regeneration
Stem Cells
4 Citations (Scopus)

Frequency specific resting state functional abnormalities in psychosis

Gohel, S., Gallego, J. A., Robinson, D. G., DeRosse, P., Biswal, B. & Szeszko, P. R., Nov 2018, In : Human Brain Mapping. 39, 11, p. 4509-4518 10 p.

Research output: Contribution to journalArticle

Psychotic Disorders
Oxygen
Healthy Volunteers
Neurobiology
Motor Cortex

Functional connectivity alterations between networks and associations with infant immune health within networks in HIV infected children on early treatment: A study at 7 years

Toich, J. T. F., Taylor, P. A., Holmes, M. J., Gohel, S., Cotton, M. F., Dobbels, E., Laughton, B., Little, F., Van Der Kouwe, A. J. W., Biswal, B. & Meintjes, E. M., Jan 11 2018, In : Frontiers in Human Neuroscience. 11, 635.

Research output: Contribution to journalArticle

HIV
Secondary Prevention
Brain
Seeds
Therapeutics
1 Citation (Scopus)

Integrative (epi) Genomic Analysis to Predict Response to Androgen-Deprivation Therapy in Prostate Cancer

Panja, S., Hayati, S., Epsi, N. J., Parrott, J. S. & Mitrofanova, A., May 2018, In : EBioMedicine. 31, p. 110-121 12 p.

Research output: Contribution to journalArticle

Androgens
Prostatic Neoplasms
Genes
Oncology
Hazards
1 Citation (Scopus)

NSD2 is a conserved driver of metastatic prostate cancer progression

Aytes, A., Giacobbe, A., Mitrofanova, A., Ruggero, K., Cyrta, J., Arriaga, J., Palomero, L., Farran-Matas, S., Rubin, M. A., Shen, M. M., Califano, A. & Abate-Shen, C., Dec 1 2018, In : Nature communications. 9, 1, 5201.

Research output: Contribution to journalArticle

Cytoplasmic and Nuclear Receptors
progressions
Allografts
Tumors
metastasis
2017
8 Citations (Scopus)

A computational systems approach identifies synergistic specification genes that facilitate lineage conversion to prostate tissue

Talos, F., Mitrofanova, A., Bergren, S. K., Califano, A. & Shen, M. M., Jan 1 2017, In : Nature communications. 8, 14662.

Research output: Contribution to journalArticle

Systems Analysis
genes
specifications
Prostate
Genes
1 Citation (Scopus)

Artificial neural network as classification method for prostate cancer incidence

Alqahtani, K. S., Srinivasan, S. & Mital, D. P., Jan 1 2017, In : International Journal of Medical Engineering and Informatics. 9, 1, p. 61-72 12 p.

Research output: Contribution to journalArticle

Prostatic Neoplasms
Neural networks
Incidence
SEER Program
Decision Trees
2 Citations (Scopus)

A single session of rTMS enhances small-worldness in writer’s cramp: Evidence from simultaneous EEG-fMRI multi-modal brain graph

Bharath, R. D., Panda, R., Reddam, V. R., Bhaskar, M. V., Gohel, S., Bhardwaj, S., Prajapati, A. & Pal, P. K., Sep 5 2017, In : Frontiers in Human Neuroscience. 11, 443.

Research output: Contribution to journalArticle

Dystonic Disorders
Transcranial Magnetic Stimulation
Electroencephalography
Magnetic Resonance Imaging
Brain
5 Citations (Scopus)

Co-clinical Analysis of a Genetically Engineered Mouse Model and Human Prostate Cancer Reveals Significance of NKX3.1 Expression for Response to 5α-reductase Inhibition

Dutta, A., Panja, S., Virk, R. K., Kim, J. Y., Zott, R., Cremers, S., Golombos, D. M., Liu, D., Mosquera, J. M., Mostaghel, E. A., Barbieri, C. E., Mitrofanova, A. & Abate-Shen, C., Oct 1 2017, In : European Urology. 72, 4, p. 499-506 8 p.

Research output: Contribution to journalArticle

Prostatic Neoplasms
Oxidoreductases
Finasteride
Prostatic Intraepithelial Neoplasia
Statistical Data Interpretation
11 Citations (Scopus)

Do all roads lead to Rome? A comparison of brain networks derived from inter-subject volumetric and metabolic covariance and moment-to-moment hemodynamic correlations in old individuals

The Alzheimer’s Disease Neuroimaging Initiative, Nov 1 2017, In : Brain Structure and Function. 222, 8, p. 3833-3845 13 p.

Research output: Contribution to journalArticle

Hemodynamics
Organizations
Metabolic Networks and Pathways
Brain
Magnetic Resonance Imaging
8 Citations (Scopus)

Localized reductions in resting-state functional connectivity in children with prenatal alcohol exposure

Fan, J., Taylor, P. A., Jacobson, S. W., Molteno, C. D., Gohel, S., Biswal, B. B., Jacobson, J. L. & Meintjes, E. M., Oct 2017, In : Human Brain Mapping. 38, 10, p. 5217-5233 17 p.

Research output: Contribution to journalArticle

Fetal Alcohol Spectrum Disorders
Alcohols
Cognition
Brain
Magnetic Resonance Imaging

Penalised Cox regression models for survival data

Zhou, D., Mital, D. P., Srinivasan, S. & Shibata, M., Jan 1 2017, In : International Journal of Medical Engineering and Informatics. 9, 1, p. 1-19 19 p.

Research output: Contribution to journalArticle

Statistical Models
Microarray Analysis
Microarrays
Proportional Hazards Models
Biomedical Research
Aortic Aneurysm
Hospital Mortality
Mortality
Guidelines
Compliance
79 Citations (Scopus)

Transdifferentiation as a mechanism of treatment resistance in a mouse model of castration-resistant prostate cancer

Zou, M., Toivanen, R., Mitrofanova, A., Floch, N., Hayati, S., Sun, Y., Le Magnen, C., Chester, D., Mostaghel, E. A., Califano, A., Rubin, M. A., Shen, M. M. & Abate-Shen, C., Jul 2017, In : Cancer Discovery. 7, 7, p. 736-749 14 p.

Research output: Contribution to journalArticle

Castration
Prostatic Neoplasms
Androgen Antagonists
Adenocarcinoma
Therapeutics
2016
1 Citation (Scopus)

Clinical decision support system for management of root canal treated teeth

Shah, A., Dipede, L., Srinivasan, S. & Mital, D. P., Jan 1 2016, In : International Journal of Medical Engineering and Informatics. 8, 3, p. 225-238 14 p.

Research output: Contribution to journalArticle

Clinical Decision Support Systems
Dental Pulp Cavity
Canals
Decision support systems
Nonvital Tooth
2 Citations (Scopus)

Drinkers' memory bias for alcohol picture cues in explicit and implicit memory tasks

Nguyen-Louie, T. T., Buckman, J. F., Ray, S. & Bates, M. E., Mar 1 2016, In : Drug and Alcohol Dependence. 160, p. 90-96 7 p.

Research output: Contribution to journalArticle

Cues
Alcohols
Data storage equipment
Beverages
Repetition Priming
5 Citations (Scopus)

Effective connectivity within the mesocorticolimbic system during resting-state in cocaine users

Ray, S., Di, X. & Biswal, B. B., Nov 9 2016, In : Frontiers in Human Neuroscience. 10, NOV2016, 563.

Research output: Contribution to journalArticle

Cocaine
Frontal Lobe
Hippocampus
Brain
Dopamine
33 Citations (Scopus)

Functional topography of the thalamocortical system in human

Yuan, R., Di, X., Taylor, P. A., Gohel, S., Tsai, Y. H. & Biswal, B. B., May 1 2016, In : Brain Structure and Function. 221, 4, p. 1971-1984 14 p.

Research output: Contribution to journalArticle

Thalamus
Brain
Pulvinar
Mediodorsal Thalamic Nucleus
Anatomy
29 Citations (Scopus)

Identification of an NKX3.1-G9a-UTY transcriptional regulatory network that controls prostate differentiation

Dutta, A., Le Magnen, C., Mitrofanova, A., Ouyang, X., Califano, A. & Abate-Shen, C., Jun 24 2016, In : Science. 352, 6293, p. 1576-1580 5 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Prostate
Prostatic Neoplasms
Seminal Vesicles
Homeobox Genes
12 Citations (Scopus)

Photosensitizer (PS)-cyanine dye (CD) conjugates: Impact of the linkers joining the PS and CD moieties and their orientation in tumor-uptake and photodynamic therapy (PDT)

James, N. S., Joshi, P., Ohulchanskyy, T. Y., Chen, Y., Tabaczynski, W., Durrani, F., Shibata, M. & Pandey, R. K., Jan 1 2016, In : European Journal of Medicinal Chemistry. 122, p. 770-785 16 p.

Research output: Contribution to journalArticle

Photodynamic therapy
Photosensitizing Agents
Photochemotherapy
Joining
Tumors
6 Citations (Scopus)

Reduced small world brain connectivity in probands with a family history of epilepsy

Bharath, R. D., Chaitanya, G., Panda, R., Raghavendra, K., Sinha, S., Sahoo, A., Gohel, S., Biswal, B. B. & Satishchandra, P., Dec 1 2016, In : European Journal of Neurology. 23, 12, p. 1729-1737 9 p.

Research output: Contribution to journalArticle

Epilepsy
Brain
Magnetic Resonance Imaging
Water
Neurobiology
5 Citations (Scopus)
Medical Informatics
Quality Improvement
Observational Studies
Retrospective Studies
Delivery of Health Care
2015
9 Citations (Scopus)

Altered functional connectivity strength in abstinent chronic cocaine smokers compared to healthy controls

Ray, S., Gohel, S. & Biswal, B. B., Oct 1 2015, In : Brain Connectivity. 5, 8, p. 476-486 11 p.

Research output: Contribution to journalArticle

Cocaine
Brain
Parietal Lobe
Occipital Lobe
1 Citation (Scopus)

Analysis of incidence of lung cancer in various states of the USA

Vyas, R., Haque, S., Mital, D. P. & Srinivasan, S., Jan 1 2015, In : International Journal of Medical Engineering and Informatics. 7, 1, p. 36-45 10 p.

Research output: Contribution to journalArticle

Lung Neoplasms
Incidence
Breast Neoplasms
Pollution
Censuses
1 Citation (Scopus)

Analysis of risk factors for prostate cancer patients

Alqahtani, K. S., Srinivasan, S., Mital, D. P. & Haque, S., Jan 1 2015, In : International Journal of Medical Engineering and Informatics. 7, 4, p. 365-380 16 p.

Research output: Contribution to journalArticle

Vitamins
Vitamin D
Prostatic Neoplasms
Alcohols
Cholesterol
1 Citation (Scopus)
Angiography
Abdominal Aortic Aneurysm
Aneurysm
Imaging techniques
Sensitivity and Specificity
67 Citations (Scopus)

Functional integration between brain regions at rest occurs in multiple-frequency bands

Gohel, S. & Biswal, B. B., Feb 1 2015, In : Brain Connectivity. 5, 1, p. 23-34 12 p.

Research output: Contribution to journalArticle

Seeds
Magnetic Resonance Imaging
Brain
Oxygen
Sampling Studies
13 Citations (Scopus)

Modeling Causal Relationship between Brain Regions Within the Drug-Cue Processing Network in Chronic Cocaine Smokers

Ray, S., Haney, M., Hanson, C., Biswal, B. & Hanson, S. J., Dec 1 2015, In : Neuropsychopharmacology. 40, 13, p. 2960-2968 9 p.

Research output: Contribution to journalArticle

Cocaine
Cues
Brain
Pharmaceutical Preparations
Prefrontal Cortex
14 Citations (Scopus)

Predicting Drug Response in Human Prostate Cancer from Preclinical Analysis of In Vivo Mouse Models

Mitrofanova, A., Aytes, A., Zou, M., Shen, M. M., Abate-Shen, C. & Califano, A., Sep 29 2015, In : Cell Reports. 12, 12, p. 2060-2071 12 p.

Research output: Contribution to journalArticle

Prostatic Neoplasms
Pharmaceutical Preparations
Drug Combinations
Neoplasms
Drug Evaluation
29 Citations (Scopus)

Recovery of resting brain connectivity ensuing mild traumatic brain injury

Bharath, R. D., Munivenkatappa, A., Gohel, S., Panda, R., Saini, J., Rajeswaran, J., Shukla, D., Bhagavatula, I. D. & Biswal, B. B., Sep 22 2015, In : Frontiers in Human Neuroscience. 9, September, 513.

Research output: Contribution to journalArticle

Brain Concussion
Brain
Parietal Lobe
Recovery of Function
Wounds and Injuries
15 Citations (Scopus)

Repetitive transcranial magnetic stimulation induced modulations of resting state motor connectivity in writer's cramp

Bharath, R. D., Biswal, B. B., Bhaskar, M. V., Gohel, S., Jhunjhunwala, K., Panda, R., George, L., Gupta, A. K. & Pal, P. K., May 1 2015, In : European Journal of Neurology. 22, 5, p. 796-e54

Research output: Contribution to journalArticle

Dystonic Disorders
Transcranial Magnetic Stimulation
Thalamus
Globus Pallidus
Magnetic Field Therapy
2 Citations (Scopus)

S-nitrosylation in organs of mice exposed to low or high doses of γ-rays: The modulating effect of iodine contrast agent at a low radiation dose

Nicolas, F., Wu, C., Bukhari, S., de Toledo, S. M., Li, H., Shibata, M. & Azzam, E. I., Jun 1 2015, In : Proteomes. 3, 2, p. 56-73 18 p.

Research output: Contribution to journalArticle

Iodine
Contrast Media
Dosimetry
Iopamidol
Radiation
2014
1 Citation (Scopus)
Radiology
Workflow
Delivery of Health Care
Equipment and Supplies
Costs

A web-based system for early detection of symptom of depression

Pandya, B. D., Mital, D. P., Srinivasan, S. & Haque, S., Jan 14 2014, In : International Journal of Medical Engineering and Informatics. 6, 1, p. 65-73 9 p.

Research output: Contribution to journalArticle

Disease control
Information management
Screening
Health
Depression
154 Citations (Scopus)

Cross-Species Regulatory Network Analysis Identifies a Synergistic Interaction between FOXM1 and CENPF that Drives Prostate Cancer Malignancy

Aytes, A., Mitrofanova, A., Lefebvre, C., Alvarez, M. J., Castillo-Martin, M., Zheng, T., Eastham, J. A., Gopalan, A., Pienta, K. J., Shen, M. M., Califano, A. & Abate-Shen, C., May 12 2014, In : Cancer Cell. 25, 5, p. 638-651 14 p.

Research output: Contribution to journalArticle

Prostatic Neoplasms
Neoplasms
Genome
Gene Expression Regulation
Transcriptional Activation

Erratum: Negative mood and alcohol problems are related to respiratory dynamics in young adults (Appl Psychophysiol Biofeedback (2013) 38 (273283) (DOI 10.1007/s10484-013-9230-9))

Lehrer, P., Buckman, J., Mun, E. Y., Vaschillo, E. G., Vaschillo, B., Udo, T., Ray, S., Nguyen, T. & Bates, M., Jan 1 2014, In : Applied Psychophysiology Biofeedback. 39, 2, 1 p.

Research output: Contribution to journalComment/debate

Young Adult
Alcohols
Biofeedback (Psychology)
28 Citations (Scopus)
Ocular Motility Disorders
Parietal Lobe
Frontal Lobe
Magnetic Resonance Imaging
Eye Movements