Waksman Institute of Microbiology

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2011

A novel method for the production of in vivo-assembled, recombinant Escherichia coli RNA polymerase lacking the α C-terminal domain

Twist, K. A., Husnain, S. I., Franke, J. D., Jain, D., Campbell, E. A., Nickels, B. E., Thomas, M. S., Darst, S. A. & Westblade, L. F., Jun 2011, In : Protein Science. 20, 6, p. 986-995 10 p.

Research output: Contribution to journalArticle

16 Scopus citations

Antibiotic production by myxobacteria plays a role in predation

Xiao, Y., Wei, X., Ebright, R. & Wall, D., Sep 2011, In : Journal of bacteriology. 193, 18, p. 4626-4633 8 p.

Research output: Contribution to journalArticle

70 Scopus citations

A pathway for synapsis initiation during zygotene in Drosophila oocytes

Tanneti, N. S., Landy, K., Joyce, E. F. & McKim, K. S., Nov 8 2011, In : Current Biology. 21, 21, p. 1852-1857 6 p.

Research output: Contribution to journalArticle

52 Scopus citations

BARREN STALK FASTIGIATE1 is an at-hook protein required for the formation of maize ears

Gallavotti, A., Malcomber, S., Gaines, C., Stanfield, S., Whipple, C., Kellogg, E. & Schmidta, R. J., May 2011, In : Plant Cell. 23, 5, p. 1756-1771 16 p.

Research output: Contribution to journalArticle

43 Scopus citations

Characterization of a Dchs1 mutant mouse reveals requirements for Dchs1-Fat4 signaling during mammalian development

Mao, Y., Mulvaney, J., Zakaria, S., Yu, T., Morgan, K. M., Allen, S., Basson, M. A., Francis-West, P. & Irvine, K. D., Mar 1 2011, In : Development. 138, 5, p. 947-957 11 p.

Research output: Contribution to journalArticle

126 Scopus citations

Characterization of peptide chain length and constituency requirements for YejABEF-mediated uptake of microcin C analogues

Vondenhoff, G. H. M., Blanchaert, B., Geboers, S., Kazakov, T., Datsenko, K. A., Wanner, B. L., Rozenski, J., Severinov, K. & Van Aerschot, A., Jul 2011, In : Journal of bacteriology. 193, 14, p. 3618-3623 6 p.

Research output: Contribution to journalArticle

17 Scopus citations

Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems

Calviño, M., Bruggmann, R. & Messing, J., Jul 8 2011, In : BMC genomics. 12, 356.

Research output: Contribution to journalArticle

40 Scopus citations

Chemical synthesis enables biochemical and antibacterial evaluation of streptolydigin antibiotics

Pronin, S. V., Martinez, A., Kuznedelov, K., Severinov, K., Shuman, H. A. & Kozmin, S. A., Aug 10 2011, In : Journal of the American Chemical Society. 133, 31, p. 12172-12184 13 p.

Research output: Contribution to journalArticle

37 Scopus citations

Contribution of a sodium ion gradient to energy conservation during fermentation in the cyanobacterium Arthrospira (Spirulina) maxima CS-328

Carrieri, D., Ananyev, G., Lenz, O., Bryant, D. A. & Dismukes, G. C., Oct 2011, In : Applied and environmental microbiology. 77, 20, p. 7185-7194 10 p.

Research output: Contribution to journalArticle

14 Scopus citations

Cooperative Regulation of Growth by Yorkie and Mad through bantam

Oh, H. & Irvine, K. D., Jan 18 2011, In : Developmental Cell. 20, 1, p. 109-122 14 p.

Research output: Contribution to journalArticle

108 Scopus citations

Differential gene expression and epiregulation of alpha zein gene copies in maize haplotypes

Miclaus, M., Xu, J. H. & Messing, J., Jun 2011, In : PLoS genetics. 7, 6, e1002131.

Research output: Contribution to journalArticle

27 Scopus citations

Differentiation of arabidopsis guard cells: Analysis of the networks incorporating the basic helix-loop-helix transcription factor, FAMA

Hachez, C., Ohashi-Ito, K., Dong, J. & Bergmann, D. C., Mar 2011, In : Plant physiology. 155, 3, p. 1458-1472 15 p.

Research output: Contribution to journalArticle

43 Scopus citations

Drosophila ATM and ATR have distinct activities in the regulation of meiotic DNA damage and repair

Joyce, E. F., Pedersen, M., Tiong, S., White-Brown, S. K., Paul, A., Campbell, S. D. & McKim, K. S., Oct 31 2011, In : Journal of Cell Biology. 195, 3, p. 359-367 9 p.

Research output: Contribution to journalArticle

67 Scopus citations

EGF signalling activates the ubiquitin proteasome system to modulate C. elegans lifespan

Liu, G., Rogers, J., Murphy, C. T. & Rongo, C., Aug 3 2011, In : EMBO Journal. 30, 15, p. 2990-3003 14 p.

Research output: Contribution to journalArticle

66 Scopus citations
13 Scopus citations

Epidermal growth factor and aging: A signaling molecule reveals a new eye opening function

Rongo, C., Sep 2011, In : Aging. 3, 9, p. 896-905 10 p.

Research output: Contribution to journalArticle

13 Scopus citations

Evolutionary significance of an algal gene encoding an [FeFe]-hydrogenase with F-domain homology and hydrogenase activity in Chlorella variabilis NC64A

Meuser, J. E., Boyd, E. S., Ananyev, G., Karns, D., Radakovits, R., Murthy, U. M. N., Ghirardi, M. L., Dismukes, G., Peters, J. W. & Posewitz, M. C., Oct 1 2011, In : Planta. 234, 4, p. 829-843 15 p.

Research output: Contribution to journalArticle

31 Scopus citations

Extended targeting potential and improved synthesis of Microcin C analogs as antibacterials

Vondenhoff, G. H. M., Dubiley, S., Severinov, K., Lescrinier, E., Rozenski, J. & Van Aerschot, A., Sep 15 2011, In : Bioorganic and Medicinal Chemistry. 19, 18, p. 5462-5467 6 p.

Research output: Contribution to journalArticle

17 Scopus citations

Francisella RNA polymerase contains a heterodimer of non-identical α subunits

Mukhamedyarov, D., Makarova, K. S., Severinov, K. & Kuznedelov, K., Nov 22 2011, In : BMC Molecular Biology. 12, 50.

Research output: Contribution to journalArticle

4 Scopus citations

High-Throughput sequencing of three Lemnoideae (duckweeds) chloroplast genomes from total DNA

Wang, W. & Messing, J., Sep 9 2011, In : PloS one. 6, 9, e24670.

Research output: Contribution to journalArticle

79 Scopus citations

Inhibition of Escherichia coli RNAp by T7 Gp2 protein: Role of negatively charged strip of amino acid residues in Gp2

Sheppard, C., Cámara, B., Shadrin, A., Akulenko, N., Liu, M., Baldwin, G., Severinov, K., Cota, E., Matthews, S. & Wigneshweraraj, S. R., Apr 15 2011, In : Journal of molecular biology. 407, 5, p. 623-632 10 p.

Research output: Contribution to journalArticle

8 Scopus citations

Initial transcribed region sequences influence the composition and functional properties of the bacterial elongation complex

Deighan, P., Pukhrambam, C., Nickels, B. E. & Hochschild, A., Jan 1 2011, In : Genes and Development. 25, 1, p. 77-88 12 p.

Research output: Contribution to journalArticle

24 Scopus citations
28 Scopus citations

Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence

Semenova, E., Jore, M. M., Datsenko, K. A., Semenova, A., Westra, E. R., Wanner, B., Van Der Oost, J., Brouns, S. J. J. & Severinov, K., Jun 21 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 25, p. 10098-10103 6 p.

Research output: Contribution to journalArticle

419 Scopus citations

Isolation and in vitro activation of caenorhabditis elegans sperm

Singaravelu, G., Chatterjee, I., Marcello, M. R. & Singson, A., Jan 2011, In : Journal of Visualized Experiments. 47, e2336.

Research output: Contribution to journalArticle

10 Scopus citations

JAK/STAT and the GATA factor Pannier control hemocyte maturation and differentiation in Drosophila

Minakhina, S., Tan, W. & Steward, R., Apr 15 2011, In : Developmental Biology. 352, 2, p. 308-316 9 p.

Research output: Contribution to journalArticle

49 Scopus citations

Kinesin-3 KLP-6 regulates intraflagellar transport in male-specific cilia of caenorhabditis elegans

Morsci, N. S. & Barr, M. M., Jul 26 2011, In : Current Biology. 21, 14, p. 1239-1244 6 p.

Research output: Contribution to journalArticle

35 Scopus citations

Meiotic checkpoints and the interchromosomal effect on crossing over in Drosophila females

Joyce, E. F. & McKim, K. S., 2011, In : Fly. 5, 2, p. 134-140 7 p.

Research output: Contribution to journalArticle

13 Scopus citations

Miniature inverted-repeat transposable element identification and genetic marker development in Agrostis

Amundsen, K., Rotter, D., Li, H. M., Messing, J., Jung, G., Belanger, F. & Warnke, S., Mar 1 2011, In : Crop Science. 51, 2, p. 854-861 8 p.

Research output: Contribution to journalArticle

8 Scopus citations

Molecular mechanism of transcription inhibition by phage T7 gp2 protein

Mekler, V., Minakhin, L., Sheppard, C., Wigneshweraraj, S. & Severinov, K., Nov 11 2011, In : Journal of molecular biology. 413, 5, p. 1016-1027 12 p.

Research output: Contribution to journalArticle

26 Scopus citations

NanoRNAs Prime Transcription Initiation In Vivo

Goldman, S. R., Sharp, J. S., Vvedenskaya, I. O., Livny, J., Dove, S. L. & Nickels, B. E., Jun 24 2011, In : Molecular cell. 42, 6, p. 817-825 9 p.

Research output: Contribution to journalArticle

67 Scopus citations

Non-coding nucleotides and amino acids near the active site regulate peptide deformylase expression and inhibitor susceptibility in Chlamydia trachomatis

Bao, X., Pachikara, N. D., Oey, C. B., Balakrishnan, A., Westblade, L. F., Tan, M., Chase, T., Nickels, B. E. & Fan, H., Sep 2011, In : Microbiology. 157, 9, p. 2569-2581 13 p.

Research output: Contribution to journalArticle

13 Scopus citations

Photocatalytic oxygen evolution from non-potable water by a bioinspired molecular water oxidation catalyst

Brimblecombe, R., Chen, J., Wagner, P., Buchhorn, T., Dismukes, G. C., Spiccia, L. & Swiegers, G. F., Mar 16 2011, In : Journal of Molecular Catalysis A: Chemical. 338, 1-2, p. 1-6 6 p.

Research output: Contribution to journalArticle

15 Scopus citations

Plastid biotechnology: Food, fuel, and medicine for the 21st century

Maliga, P. & Bock, R., Apr 1 2011, In : Plant physiology. 155, 4, p. 1501-1510 10 p.

Research output: Contribution to journalArticle

139 Scopus citations

RanGTP is required for meiotic spindle organization and the initiation of embryonic development in Drosophila

Cesario, J. & McKim, K. S., Nov 15 2011, In : Journal of cell science. 124, 22, p. 3797-3810 14 p.

Research output: Contribution to journalArticle

25 Scopus citations

Regulated antisense transcription controls expression of cell-type-specific genes in yeast

Gelfand, B., Mead, J., Bruning, A., Apostolopoulos, N., Tadigotla, V., Nagaraj, V., Sengupta, A. & Vershon, A., Apr 2011, In : Molecular and cellular biology. 31, 8, p. 1701-1709 9 p.

Research output: Contribution to journalArticle

62 Scopus citations

Regulation of Drosophila glial cell proliferation by Merlin-Hippo signaling

Reddy, B. V. V. G. & Irvine, K. D., Dec 1 2011, In : Development. 138, 23, p. 5201-5212 12 p.

Research output: Contribution to journalArticle

44 Scopus citations

Regulation of gene expression in restriction-modification system Eco29kI

Nagornykh, M., Zakharova, M., Protsenko, A., Bogdanova, E., Solonin, A. S. & Severinov, K., Jun 2011, In : Nucleic acids research. 39, 11, p. 4653-4663 11 p.

Research output: Contribution to journalArticle

12 Scopus citations
154 Scopus citations

Reprint of: Inhibition of Escherichia coli RNAp by T7 Gp2 protein: Role of Negatively Charged Strip of Amino Acid Residues in Gp2

Sheppard, C., Cámara, B., Shadrin, A., Akulenko, N., Liu, M., Baldwin, G., Severinov, K., Cota, E., Matthews, S. & Wigneshweraraj, S. R., Oct 7 2011, In : Journal of molecular biology. 412, 5, p. 832-841 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

Sperm status regulates sexual attraction in Caenorhabditis elegans

Morsci, N. S., Haas, L. A. & Barr, M. M., Dec 2011, In : Genetics. 189, 4, p. 1341-1346 6 p.

Research output: Contribution to journalArticle

26 Scopus citations

Structural basis for microcin C7 inactivation by the MccE acetyltransferase

Agarwal, V., Metlitskaya, A., Severinov, K. & Nair, S. K., Jun 17 2011, In : Journal of Biological Chemistry. 286, 24, p. 21295-21303 9 p.

Research output: Contribution to journalArticle

20 Scopus citations

Synechococcus sp. strain PCC 7002 nifJ mutant lacking pyruvate:Ferredoxin oxidoreductase

McNeely, K., Xu, Y., Ananyev, G., Bennette, N., Bryant, D. A. & Dismukes, G. C., Apr 1 2011, In : Applied and environmental microbiology. 77, 7, p. 2435-2444 10 p.

Research output: Contribution to journalArticle

28 Scopus citations

Temporal regulation of gene expression of the thermus thermophilus bacteriophage P23-45

Berdygulova, Z., Westblade, L. F., Florens, L., Koonin, E. V., Chait, B. T., Ramanculov, E., Washburn, M. P., Darst, S. A., Severinov, K. & Minakhin, L., Jan 7 2011, In : Journal of molecular biology. 405, 1, p. 125-142 18 p.

Research output: Contribution to journalArticle

23 Scopus citations

The antibacterial threaded-lasso peptide capistruin inhibits bacterial RNA polymerase

Kuznedelov, K., Semenova, E., Knappe, T. A., Mukhamedyarov, D., Srivastava, A., Chatterjee, S., Ebright, R. H., Marahiel, M. A. & Severinov, K., Oct 7 2011, In : Journal of molecular biology. 412, 5, p. 842-848 7 p.

Research output: Contribution to journalArticle

48 Scopus citations

The Initiation Factor TFE and the Elongation Factor Spt4/5 Compete for the RNAP Clamp during Transcription Initiation and Elongation

Grohmann, D., Nagy, J., Chakraborty, A., Klose, D., Fielden, D., Ebright, R. H., Michaelis, J. & Werner, F., Jul 22 2011, In : Molecular cell. 43, 2, p. 263-274 12 p.

Research output: Contribution to journalArticle

96 Scopus citations

The maize high-lysine mutant opaque7 is defective in an Acyl-CoA synthetase-like protein

Miclaus, M., Wu, Y., Xu, J. H., Dooner, H. K. & Messing, J., Dec 2011, In : Genetics. 189, 4, p. 1271-1280 10 p.

Research output: Contribution to journalArticle

27 Scopus citations

The tubulin deglutamylase CCPP-1 regulates the function and stability of sensory cilia in C. elegans

O'Hagan, R., Piasecki, B. P., Silva, M., Phirke, P., Nguyen, K. C. Q., Hall, D. H., Swoboda, P. & Barr, M. M., Oct 25 2011, In : Current Biology. 21, 20, p. 1685-1694 10 p.

Research output: Contribution to journalArticle

64 Scopus citations

Visual spectinomycin resistance (aadAau) gene for facile identification of transplastomic sectors in tobacco leaves

Tungsuchat-Huang, T., Slivinski, K. M., Sinagawa-Garcia, S. R. & Maliga, P., Jul 1 2011, In : Plant Molecular Biology. 76, 3-5, p. 453-461 9 p.

Research output: Contribution to journalArticle

10 Scopus citations

Zyxin links fat signaling to the hippo pathway

Rauskolb, C., Pan, G., Reddy, B. V. V. G., Oh, H. & Irvine, K. D., Jun 2011, In : PLoS biology. 9, 6, e1000624.

Research output: Contribution to journalArticle

116 Scopus citations