Waksman Institute of Microbiology

Research Output 1972 2019

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Comment/debate
2019

Erratum: Single-nucleotide-resolution mapping of DNA gyrase cleavage sites across the Escherichia coli genome (Nucleic acids research (2018))

Sutormin, D., Rubanova, N., Logacheva, M., Ghilarov, D. & Severinov, K., Feb 20 2019, In : Nucleic acids research. 47, 3, 1 p.

Research output: Contribution to journalComment/debate

Open Access
Nucleotide Mapping
DNA Gyrase
DNA Cleavage
Nucleic Acids
Genome
2017
13 Citations (Scopus)

Taking stock of the Drosophila research ecosystem

Bilder, D. & Irvine, K., Jul 1 2017, In : Genetics. 206, 3, p. 1227-1236 10 p.

Research output: Contribution to journalComment/debate

Diptera
Drosophila
Ecosystem
Research
Computational Biology
2016
30 Citations (Scopus)

Erratum: Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape (Cell (2016) 165(5) (1280–1292))

O'Malley, R. C., Huang, S. S. C., Song, L., Lewsey, M. G., Bartlett, A., Nery, J. R., Galli, M., Gallavotti, A. & Ecker, J. R., Sep 8 2016, In : Cell. 166, 6, 1 p.

Research output: Contribution to journalComment/debate

DNA
Ligation
Oligonucleotides
Base Pairing
Purification
1 Citation (Scopus)

Middle Age Has Its Advantages

Barr, M., Dec 1 2016, In : PLoS genetics. 12, 12, e1006426.

Research output: Contribution to journalComment/debate

Middle Ages
2013

Erratum: Ribosomally synthesized and post-translationally modified peptide natural products: Overview and recommendations for a universal nomenclature (Natural Product Reports (2013) 30 (108-160) DOI:10.1039/C2NP20085F)

Arnison, P. G., Bibb, M. J., Bierbaum, G., Bowers, A. A., Bugni, T. S., Bulaj, G., Camarero, J. A., Campopiano, D. J., Challis, G. L., Clardy, J., Cotter, P. D., Craik, D. J., Dawson, M., Dittmann, E., Donadio, S., Dorrestein, P. C., Entian, K. D., Fischbach, M. A., Garavelli, J. S., Göransson, U. & 45 others, Gruber, C. W., Ha, D. H., Hemscheidt, T. K., Hertweck, C., Hill, C., Horswill, A. R., Jaspars, M., Kelly, W. L., Klinman, J. P., Kuipers, O. P., Link, A. J., Liu, W., Marahiel, M. A., Mitchell, D. A., Moll, G. N., Moore, B. S., Müller, R., Nair, S. K., Nes, I. F., Norris, G. E., Olivera, B. M., Onaka, H., Patchett, M. L., Piel, J., Reaney, M. J. T., Rebuffat, S., Ross, R. P., Sahl, H. G., Schmidt, E. W., Selsted, M. E., Severinov, K., Shen, B., Sivonen, K., Smith, L., Stein, T., Süssmuth, R. D., Tagg, J. R., Tang, G. L., Truman, A. W., Vederas, J. C., Walsh, C. T., Walton, J. D., Wenzel, S. C., Willey, J. M. & Van Der Donk, W. A., Dec 1 2013, In : Natural Product Reports. 30, 12, 1 p.

Research output: Contribution to journalComment/debate

2012
16 Citations (Scopus)

Drosophila as a model for understanding development and disease

Singh, A. & Irvine, K., Jan 1 2012, In : Developmental Dynamics. 241, 1, p. 1-2 2 p.

Research output: Contribution to journalComment/debate

Drosophila
Animal Models

Erratum: Hypoxia regulates glutamate receptor trafficking through an HIF-independent mechanism (The EMBO Journal (2012) 31 (1618-1619) DOI:10.1038/emboj.2012.44)

Park, E. C., Ghose, P., Shao, Z., Ye, Q., Kang, L., Xu, X. S., Powell-Coffman, J. A. & Rongo, C., Mar 21 2012, In : EMBO Journal. 31, 6, p. 1618-1619 2 p.

Research output: Contribution to journalComment/debate

Glutamate Receptors
Hypoxia
2 Citations (Scopus)

Mitigate the risks of release

Ebright, R., Jan 19 2012, In : Nature. 481, 7381, 1 p.

Research output: Contribution to journalComment/debate

2011
1 Citation (Scopus)

Erratum: Structure of the CAP-DNA complex at 2.5 Å resolution: A complete picture of the protein-DNA Interface (Journal of Molecular Biology (1996) 260:3 (395-408))

Parkinson, G., Wilson, C., Gunasekera, A., Ebright, Y. W., Ebright, R. & Berman, H., Nov 18 2011, In : Journal of molecular biology. 414, 1, 1 p.

Research output: Contribution to journalComment/debate

Molecular Biology
DNA
Proteins
21 Citations (Scopus)

Novel genetic selection system for quantitative trait loci of quality protein maize

Wu, Y. & Messing, J., Aug 1 2011, In : Genetics. 188, 4, p. 1019-1022 4 p.

Research output: Contribution to journalComment/debate

Genetic Selection
Quantitative Trait Loci
Hardness
Lysine
Zea mays
2010
2 Citations (Scopus)

Russia woos lost scientists

Schiermeier, Q. & Severinov, K., Jun 17 2010, In : Nature. 465, 7300, 1 p.

Research output: Contribution to journalComment/debate

International Cooperation
Russia
Research
2009
6 Citations (Scopus)

A new twist on a classic paradigm: Illumination of a genetic switch in Vibrio cholerae phage CTX

Nickels, B., Nov 1 2009, In : Journal of bacteriology. 191, 22, p. 6779-6781 3 p.

Research output: Contribution to journalComment/debate

Bacterial Gene Expression Regulation
Serine Endopeptidases
Repressor Proteins
Prophages
Biological Models
2008

Discussion

Dismukes, G., Yachandra, V., Pace, R. & Barber, J., Mar 27 2008, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 363, 1494, 1 p.

Research output: Contribution to journalComment/debate

2007

Erratum: Low-molecular-weight post-translationally modified microcins (Molecular Microbiology (2007) 65, (1380-1394))

Severinov, K., Semenova, E., Kazakov, A., Kazakov, T. & Gelfand, M. S., Oct 1 2007, In : Molecular microbiology. 66, 1, 1 p.

Research output: Contribution to journalComment/debate

Microbiology
Molecular Weight
microcin

Erratum: Activity-independent regulation of dendrite patterning by postsynaptic density protein PSD-95 (Journal of Neuroscience (2006) (10164-10176))

Charych, E. I., Akum, B. F., Goldberg, J. S., Jörnsten, R. J., Rongo, C., Zheng, J. Q. & Firestein-Miller, B., Nov 8 2006, In : Journal of Neuroscience. 26, 45, 1 p.

Research output: Contribution to journalComment/debate

Neurosciences
Dendrites
postsynaptic density proteins
2005
Glycomics
Drosophila
DNA-Directed RNA Polymerases
Genes
2003

Erratum: Notch activity in neural cells triggered by a mutant allele with altered glycosylation (Development vol. 130 (2829-2840))

Li, Y., Li, L., Irvine, K. & Baker, N. E., Aug 1 2003, In : Development. 130, 15, 1 p.

Research output: Contribution to journalComment/debate

2001
6 Citations (Scopus)
bacteriophage T7 RNA polymerase
2000

Erratum: The Drosophila shark tyrosine kinase is required for embryonic dorsal closure (Genes and Development 14 (604-614))

Fernandez, R., Takahashi, F., Liu, Z., Steward, R., Stein, D. & Stanley, E. R., Apr 1 2000, In : Genes and Development. 14, 7, 1 p.

Research output: Contribution to journalComment/debate

Genes
Drosophila Shark protein
1999
Molecular Biology
Escherichia coli
Proteins
bacteriophage T7 RNA polymerase
10 Citations (Scopus)

Intracellular signaling: Fleshing out the TGFβ pathway

Padgett, R., Jun 3 1999, In : Current Biology. 9, 11

Research output: Contribution to journalComment/debate

transforming growth factors
Transforming Growth Factors
Ligands
receptors
Substrates
1998

Corrigendum: Mutational analysis of a transcriptional activation region of the VP16 protein of herpes simplex virus (Nucleic Acids Research (1998) 26 (4487-4496)

Sullivan, S. M., Hom, P. J., Olson, V. A., Koop, A. H., Niu, W., Ebright, R. & Triezenberg, S. J., Dec 1 1998, In : Nucleic Acids Research. 26, 23, p. 5537-5538 2 p.

Research output: Contribution to journalComment/debate

2 Citations (Scopus)
Lac Operon
Genetic Engineering
Escherichia coli
Genes
1990

Erratum: Lysine 188 of the catobolite gene activator protein (CAP) plays no role in specificity at base pair 7 of the DNA half site (Nucleic Acids Research, 18, pp. 1457-1464 (1990))

Ebright, R., Gunasekera, A., Zhang, X., Kunkel, T. A. & Krakow, J. S., Jun 15 1990, In : Nucleic Acids Research. 18, 10, 1 p.

Research output: Contribution to journalComment/debate

Base Pairing
Nucleic Acids
Lysine
DNA
Research