Waksman Institute of Microbiology

Research Output 1972 2019

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Comment/debate
6 Citations (Scopus)

A new twist on a classic paradigm: Illumination of a genetic switch in Vibrio cholerae phage CTX

Nickels, B., Nov 1 2009, In : Journal of bacteriology. 191, 22, p. 6779-6781 3 p.

Research output: Contribution to journalComment/debate

Bacterial Gene Expression Regulation
Serine Endopeptidases
Repressor Proteins
Prophages
Biological Models

Corrigendum: Mutational analysis of a transcriptional activation region of the VP16 protein of herpes simplex virus (Nucleic Acids Research (1998) 26 (4487-4496)

Sullivan, S. M., Hom, P. J., Olson, V. A., Koop, A. H., Niu, W., Ebright, R. & Triezenberg, S. J., Dec 1 1998, In : Nucleic Acids Research. 26, 23, p. 5537-5538 2 p.

Research output: Contribution to journalComment/debate

2 Citations (Scopus)

Discussion

Pace, R., Messinger, J., Britt, R. D., Dismukes, C. & Boussac, A., Mar 27 2008, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 363, 1494, 1 p.

Research output: Contribution to journalComment/debate

Discussion

Dismukes, C., Yachandra, V., Pace, R. & Barber, J., Mar 27 2008, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 363, 1494, 1 p.

Research output: Contribution to journalComment/debate

Discussion

Dismukes, C., Nocera, D. & Aulauloo, A., Mar 27 2008, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 363, 1494, 1 p.

Research output: Contribution to journalComment/debate

Discussion

Dismukes, C., Britt, D., Doust, A. B. & Dau, H., Mar 27 2008, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 363, 1494, 1 p.

Research output: Contribution to journalComment/debate

16 Citations (Scopus)

Drosophila as a model for understanding development and disease

Singh, A. & Irvine, K., Jan 1 2012, In : Developmental Dynamics. 241, 1, p. 1-2 2 p.

Research output: Contribution to journalComment/debate

Drosophila
Animal Models
Functional analysis
Glycomics

Erratum: Notch activity in neural cells triggered by a mutant allele with altered glycosylation (Development vol. 130 (2829-2840))

Li, Y., Li, L., Irvine, K. & Baker, N. E., Aug 1 2003, In : Development. 130, 15, 1 p.

Research output: Contribution to journalComment/debate

Erratum: Ribosomally synthesized and post-translationally modified peptide natural products: Overview and recommendations for a universal nomenclature (Natural Product Reports (2013) 30 (108-160) DOI:10.1039/C2NP20085F)

Arnison, P. G., Bibb, M. J., Bierbaum, G., Bowers, A. A., Bugni, T. S., Bulaj, G., Camarero, J. A., Campopiano, D. J., Challis, G. L., Clardy, J., Cotter, P. D., Craik, D. J., Dawson, M., Dittmann, E., Donadio, S., Dorrestein, P. C., Entian, K. D., Fischbach, M. A., Garavelli, J. S., Göransson, U. & 45 others, Gruber, C. W., Ha, D. H., Hemscheidt, T. K., Hertweck, C., Hill, C., Horswill, A. R., Jaspars, M., Kelly, W. L., Klinman, J. P., Kuipers, O. P., Link, A. J., Liu, W., Marahiel, M. A., Mitchell, D. A., Moll, G. N., Moore, B. S., Müller, R., Nair, S. K., Nes, I. F., Norris, G. E., Olivera, B. M., Onaka, H., Patchett, M. L., Piel, J., Reaney, M. J. T., Rebuffat, S., Ross, R. P., Sahl, H. G., Schmidt, E. W., Selsted, M. E., Severinov, K., Shen, B., Sivonen, K., Smith, L., Stein, T., Süssmuth, R. D., Tagg, J. R., Tang, G. L., Truman, A. W., Vederas, J. C., Walsh, C. T., Walton, J. D., Wenzel, S. C., Willey, J. M. & Van Der Donk, W. A., Dec 1 2013, In : Natural Product Reports. 30, 12, 1 p.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)

Erratum: Structure of the CAP-DNA complex at 2.5 Å resolution: A complete picture of the protein-DNA Interface (Journal of Molecular Biology (1996) 260:3 (395-408))

Parkinson, G., Wilson, C., Gunasekera, A., Ebright, Y. W., Ebright, R. & Berman, H., Nov 18 2011, In : Journal of molecular biology. 414, 1, 1 p.

Research output: Contribution to journalComment/debate

Molecular Biology
DNA
Proteins

Erratum: Lysine 188 of the catobolite gene activator protein (CAP) plays no role in specificity at base pair 7 of the DNA half site (Nucleic Acids Research, 18, pp. 1457-1464 (1990))

Ebright, R., Gunasekera, A., Zhang, X., Kunkel, T. A. & Krakow, J. S., Jun 15 1990, In : Nucleic Acids Research. 18, 10, 1 p.

Research output: Contribution to journalComment/debate

Base Pairing
Nucleic Acids
Lysine
DNA
Research
32 Citations (Scopus)

Erratum: Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape (Cell (2016) 165(5) (1280–1292))

O'Malley, R. C., Huang, S. S. C., Song, L., Lewsey, M. G., Bartlett, A., Nery, J. R., Galli, M., Gallavotti, A. & Ecker, J. R., Sep 8 2016, In : Cell. 166, 6, 1 p.

Research output: Contribution to journalComment/debate

DNA
Ligation
Oligonucleotides
Base Pairing
Purification

Erratum: The Drosophila shark tyrosine kinase is required for embryonic dorsal closure (Genes and Development 14 (604-614))

Fernandez, R., Takahashi, F., Liu, Z., Steward, R., Stein, D. & Stanley, E. R., Apr 1 2000, In : Genes and Development. 14, 7, 1 p.

Research output: Contribution to journalComment/debate

Genes
Drosophila Shark protein

Erratum: Low-molecular-weight post-translationally modified microcins (Molecular Microbiology (2007) 65, (1380-1394))

Severinov, K., Semenova, E., Kazakov, A., Kazakov, T. & Gelfand, M. S., Oct 1 2007, In : Molecular microbiology. 66, 1, 1 p.

Research output: Contribution to journalComment/debate

Microbiology
Molecular Weight
microcin

Erratum: Activity-independent regulation of dendrite patterning by postsynaptic density protein PSD-95 (Journal of Neuroscience (2006) (10164-10176))

Charych, E. I., Akum, B. F., Goldberg, J. S., Jörnsten, R. J., Rongo, C., Zheng, J. Q. & Firestein-Miller, B., Nov 8 2006, In : Journal of Neuroscience. 26, 45, 1 p.

Research output: Contribution to journalComment/debate

Neurosciences
Dendrites
postsynaptic density proteins
DNA-Directed RNA Polymerases
Genes
Molecular Biology
Escherichia coli
Proteins
bacteriophage T7 RNA polymerase

Erratum: Single-nucleotide-resolution mapping of DNA gyrase cleavage sites across the Escherichia coli genome (Nucleic acids research (2018))

Sutormin, D., Rubanova, N., Logacheva, M., Ghilarov, D. & Severinov, K., Feb 20 2019, In : Nucleic acids research. 47, 3, 1 p.

Research output: Contribution to journalComment/debate

Open Access
Nucleotide Mapping
DNA Gyrase
DNA Cleavage
Nucleic Acids
Genome

Erratum: Hypoxia regulates glutamate receptor trafficking through an HIF-independent mechanism (The EMBO Journal (2012) 31 (1618-1619) DOI:10.1038/emboj.2012.44)

Park, E. C., Ghose, P., Shao, Z., Ye, Q., Kang, L., Xu, X. S., Powell-Coffman, J. A. & Rongo, C., Mar 21 2012, In : EMBO Journal. 31, 6, p. 1618-1619 2 p.

Research output: Contribution to journalComment/debate

Glutamate Receptors
10 Citations (Scopus)

Intracellular signaling: Fleshing out the TGFβ pathway

Padgett, R., Jun 3 1999, In : Current Biology. 9, 11

Research output: Contribution to journalComment/debate

transforming growth factors
Transforming Growth Factors
Ligands
receptors
Substrates
1 Citation (Scopus)

Middle Age Has Its Advantages

Barr, M., Dec 1 2016, In : PLoS genetics. 12, 12, e1006426.

Research output: Contribution to journalComment/debate

Middle Ages
2 Citations (Scopus)

Mitigate the risks of release

Ebright, R., Jan 19 2012, In : Nature. 481, 7381, 1 p.

Research output: Contribution to journalComment/debate

22 Citations (Scopus)

Novel genetic selection system for quantitative trait loci of quality protein maize

Wu, Y. & Messing, J., Aug 1 2011, In : Genetics. 188, 4, p. 1019-1022 4 p.

Research output: Contribution to journalComment/debate

Genetic Selection
Quantitative Trait Loci
Hardness
Lysine
Zea mays
2 Citations (Scopus)
Lac Operon
Genetic Engineering
Escherichia coli
Genes
2 Citations (Scopus)

Russia woos lost scientists

Schiermeier, Q. & Severinov, K., Jun 17 2010, In : Nature. 465, 7300, 1 p.

Research output: Contribution to journalComment/debate

International Cooperation
Russia
Research
6 Citations (Scopus)
bacteriophage T7 RNA polymerase
13 Citations (Scopus)

Taking stock of the Drosophila research ecosystem

Bilder, D. & Irvine, K. D., Jul 2017, In : Genetics. 206, 3, p. 1227-1236 10 p.

Research output: Contribution to journalComment/debate

Diptera
Drosophila
Ecosystem
Research
Computational Biology