• 28710 Citations
  • 48 h-Index
1985 …2021

Research output per year

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Research Output

1985

Binding of an antitumor drug to DNA. Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G

Kopka, M. L., Yoon, C., Goodsell, D., Pjura, P. & Dickerson, R. E., Jun 25 1985, In : Journal of molecular biology. 183, 4, p. 553-563 11 p.

Research output: Contribution to journalArticle

394 Scopus citations

Induction and characterization of lymphotoxins from tumor promoter — Synergized, lectin-stimulated human lymphocytes in vitro

Klostergaard, J., Goodsell, D. & Granger, G. A., Jan 1 1985, In : Journal of Biological Response Modifiers. 4, 2, p. 195-209 15 p.

Research output: Contribution to journalArticle

The molecular origin of DNA-drug specificity in netropsin and distamycin

Kopka, M. L., Yoon, C., Goodsell, D., Pjura, P. & Dickerson, R. E., Jun 26 1985, In : Proceedings of the National Academy of Sciences of the United States of America. 82, 5, p. 1376-1380 5 p.

Research output: Contribution to journalArticle

866 Scopus citations
1986

Isohelical Analysis of DNA Groove-Binding Drugs

Goodsell, D. & Dickerson, R. E., Jan 1 1986, In : Journal of medicinal chemistry. 29, 5, p. 727-733 7 p.

Research output: Contribution to journalArticle

158 Scopus citations
1987

The effect of crystal packing on oligonucleotide double helix structure

Dickerson, R. E., Goodsell, D. S., Kopka, M. L. & Pjura, P. E., Dec 1987, In : Journal of Biomolecular Structure and Dynamics. 5, 3, p. 557-579 23 p.

Research output: Contribution to journalArticle

128 Scopus citations
1988

RMS: Programs for generating raster molecule surfaces

Goodsell, D. S., Jan 1 1988, In : Journal of Molecular Graphics. 6, 1, 1 p.

Research output: Contribution to journalArticle

2 Scopus citations

RMS: programs for generating raster molecular surfaces

Goodsell, D. S., Mar 1988, In : Journal of Molecular Graphics. 6, 1, p. 41-44 4 p.

Research output: Contribution to journalArticle

5 Scopus citations

Structure of an alternating-B DNA helix and its relationship to A-tract DNA

Yoon, C., Prive, G. G., Goodsell, D. S. & Dickerson, R. E., Jan 1 1988, In : Proceedings of the National Academy of Sciences of the United States of America. 85, 17, p. 6332-6336 5 p.

Research output: Contribution to journalArticle

263 Scopus citations
1989

Molecular applications of volume rendering and 3-D texture maps

Goodsell, D. S. & Olson, A. J., May 18 1989, p. 27-31. 5 p.

Research output: Contribution to conferencePaper

3 Scopus citations

Rendering volumetric data in molecular systems

Goodsell, D. S., Mian, I. S. & Olson, A. J., Mar 1989, In : Journal of Molecular Graphics. 7, 1, p. 41-47 7 p.

Research output: Contribution to journalArticle

35 Scopus citations

The structure of DAPI bound to DNA

Larsen, T. A., Goodsell, D. S., Cascio, D., Grzeskowiak, K. & Dickerson, R. E., Dec 1989, In : Journal of Biomolecular Structure and Dynamics. 7, 3, p. 477-491 15 p.

Research output: Contribution to journalArticle

208 Scopus citations
1990

Automated docking of substrates to proteins by simulated annealing

Goodsell, D. & Olson, A. J., Jan 1 1990, In : Proteins: Structure, Function, and Bioinformatics. 8, 3, p. 195-202 8 p.

Research output: Contribution to journalArticle

916 Scopus citations

Rendering of volumetric data in biological systems

Goodsell, D. & Olson, A. J., Dec 1 1990, Proceedings of SPIE - The International Society for Optical Engineering. Smith, L. C. (ed.). Publ by Int Soc for Optical Engineering, Vol. 1205. p. 117-124 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
1991

Inside a living cell

Goodsell, D., Jan 1 1991, In : Trends in Biochemical Sciences. 16, C, p. 203-206 4 p.

Research output: Contribution to journalArticle

257 Scopus citations
1992

Macromolecular graphics. Current Opinion in Structural Biology 1992, 2:193-201

Olson, A. J. & Goodsell, D. S., Jan 1 1992, In : Current Opinion in Structural Biology. 2, 2, p. 193-201 9 p.

Research output: Contribution to journalArticle

9 Scopus citations

Molecular illustration in black and white

Goodsell, D. S. & Olson, A. J., Jan 1 1992, In : Journal of Molecular Graphics. 10, 4, p. 235-240 6 p.

Research output: Contribution to journalArticle

14 Scopus citations

Visualizing biological molecules

Olson, A. J. & Goodsell, D. S., Jan 1 1992, In : Scientific American. 267, 5, p. 76-81 6 p.

Research output: Contribution to journalArticle

14 Scopus citations
1993

Automated docking in crystallography: Analysis of the substrates of aconitase

Goodsell, D., Lauble, H., Stout, C. D. & Olson, A. J., Jan 1 1993, In : Proteins: Structure, Function, and Bioinformatics. 17, 1, p. 1-10 10 p.

Research output: Contribution to journalArticle

72 Scopus citations

Crystallographic Analysis of C-C-A-A-G-C-T-T-G-G and Its Implications for Bending in B-DNA

Grzeskowiak, K., Goodsell, D. S., Kaczor-Grzeskowiak, M., Cascio, D. & Dickerson, R. E., Jan 1 1993, In : Biochemistry. 32, 34, p. 8923-8931 9 p.

Research output: Contribution to journalArticle

71 Scopus citations

Crystal structure of CATGGCCATG and its implications for A-tract bending models

Goodsell, D. S., Kopka, M. L., Cascio, D. & Dickerson, R. E., Jan 1 1993, In : Proceedings of the National Academy of Sciences of the United States of America. 90, 7, p. 2930-2934 5 p.

Research output: Contribution to journalArticle

142 Scopus citations

Soluble proteins: Size, shape and function

Goodsell, D. S. & Olson, A. J., Mar 1993, In : Trends in Biochemical Sciences. 18, 3, p. 65-68 4 p.

Research output: Contribution to journalArticle

78 Scopus citations
1994

'. . . The tyranny of the lattice . . .'

Dickerson, R. E., Goodsell, D. S. & Neidle, S., Jan 1 1994, In : Proceedings of the National Academy of Sciences of the United States of America. 91, 9, p. 3579-3583 5 p.

Research output: Contribution to journalArticle

185 Scopus citations

Bending and curvature calculations in B-DNA

Goodsell, D. S. & Dickerson, R. E., Dec 1 1994, In : Nucleic acids research. 22, 24, p. 5497-5503 7 p.

Research output: Contribution to journalArticle

231 Scopus citations

Crystal Structure of a Covalent DNA—Drug Adduct: Anthramycin Bound to C-C-A-A-C-G-T-T-G-G and a Molecular Explanation of Specificity

Kopka, M. L., Goodsell, D. S., Baikalov, I., Grzeskowiak, K., Cascio, D. & Dickerson, R. E., Nov 1 1994, In : Biochemistry. 33, 46, p. 13593-13610 18 p.

Research output: Contribution to journalArticle

113 Scopus citations

Letter to the editor

Goodsell, D. S., Apr 1994, In : Biochemical Education. 22, 2, 1 p.

Research output: Contribution to journalLetter

The crystal structure of C-C-A-T-T-A-A-T-G-G implications for bending of B-DNA at T-A steps

Goodsell, D. S., Kaczor-Grzeskowiak, M. & Dickerson, R. E., May 26 1994, In : Journal of molecular biology. 239, 1, p. 79-96 18 p.

Research output: Contribution to journalArticle

143 Scopus citations
1995

1994 Molecular Graphics Art Show and Video Show

Goodsell, D., Larsen, T. A. & O'Donnell, T. J., Aug 1 1995, In : Journal of Molecular Graphics. 13, 4, p. 223-234 12 p.

Research output: Contribution to journalArticle

Crystal Structure of C-T-C-T-C-G-A-G-A-G. Implications for the Structure of the Holliday Junction

Goodsell, D. S., Grzeskowiak, K. & Dickerson, R. E., Jan 1995, In : Biochemistry. 34, 3, p. 1022-1029 8 p.

Research output: Contribution to journalArticle

53 Scopus citations

Design of B‐DNA cross‐linking and sequence‐reading molecules

Walker, W. L., Kopka, M. L., Filipowsky, M. E., Dickerson, R. E. & Goodsell, D., Jan 1 1995, In : Biopolymers. 35, 5, p. 543-553 11 p.

Research output: Contribution to journalArticle

15 Scopus citations

Refinement of Netropsin Bound to DNA: Bias and Feedback in Electron Density Map Interpretation

Goodsell, D. S., Kopka, M. L. & Dickerson, R. E., Apr 1 1995, In : Biochemistry. 34, 15, p. 4983-4993 11 p.

Research output: Contribution to journalArticle

83 Scopus citations

Structure of a Dicationic Monoimidazole Lexitropsin Bound to DNA

Goodsell, D. S., Ng, H. L., Kopka, M. L., Lown, J. W. & Dickerson, R. E., Dec 1995, In : Biochemistry. 34, 51, p. 16654-16661 8 p.

Research output: Contribution to journalArticle

36 Scopus citations
1996

Automated docking of flexible ligands: Applications of AutoDock

Goodsell, D. S., Morris, G. M. & Olson, A. J., Jan 1 1996, In : Journal of Molecular Recognition. 9, 1, p. 1-5 5 p.

Research output: Contribution to journalArticle

1039 Scopus citations

Chapter 7 Molecules in living cells

Goodsell, D. S., Dec 1 1996, In : Principles of Medical Biology. 3, C, p. 173-180 8 p.

Research output: Contribution to journalArticle

Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4

Morris, G. M., Goodsell, D. S., Huey, R. & Olson, A. J., Jan 1 1996, In : Journal of Computer-Aided Molecular Design. 10, 4, p. 293-304 12 p.

Research output: Contribution to journalArticle

849 Scopus citations

MPD and DNA bending in crystals and in solution

Dickerson, R. E., Goodsell, D. & Kopka, M. L., Feb 16 1996, In : Journal of molecular biology. 256, 1, p. 108-125 18 p.

Research output: Contribution to journalArticle

103 Scopus citations
1997

Defining GC-specificity in the minor groove: Side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G

Kopka, M. L., Goodsell, D. S., Han, G. W., Chiu, T. K., Lown, J. W. & Dickerson, R. E., Jan 1 1997, In : Structure. 5, 8, p. 1033-1046 14 p.

Research output: Contribution to journalArticle

101 Scopus citations

Design of stapled DNA-minor-groove-binding molecules with a mutable atom simulated annealing method

Walker, W. L., Kopka, M. L., Dickerson, R. E. & Goodsell, D., Jan 1 1997, In : Journal of Computer-Aided Molecular Design. 11, 6, p. 539-546 8 p.

Research output: Contribution to journalArticle

4 Scopus citations

Estimation of the DNA sequence discriminatory ability of hairpin-linked lexitropsins

Walker, W. L., Landaw, E. M., Dickerson, R. E. & Goodsell, D. S., May 27 1997, In : Proceedings of the National Academy of Sciences of the United States of America. 94, 11, p. 5634-5639 6 p.

Research output: Contribution to journalArticle

21 Scopus citations

Progress in the Design of DNA Sequence-Specific Lexitropsins

Walker, W. L., Kopka, M. L. & Goodsell, D. S., Jan 1 1997, In : Biopolymers - Biospectroscopy Section. 44, 4, p. 323-334 12 p.

Research output: Contribution to journalArticle

33 Scopus citations
1998

An analysis of a class of DNA sequence reading molecules

Walker, W. L., Goodsell, D. & Landaw, E. M., Jan 1 1998, In : Journal of Computational Biology. 5, 3, p. 571-583 13 p.

Research output: Contribution to journalArticle

2 Scopus citations

Automated docking and the search for HIV protease inhibitors.

Olson, A. J. & Goodsell, D. S., 1998, In : SAR and QSAR in environmental research. 8, 3-4, p. 273-285 13 p.

Research output: Contribution to journalReview article

25 Scopus citations

Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function

Morris, G. M., Goodsell, D. S., Halliday, R. S., Huey, R., Hart, W. E., Belew, R. K. & Olson, A. J., Nov 15 1998, In : Journal of Computational Chemistry. 19, 14, p. 1639-1662 24 p.

Research output: Contribution to journalArticle

7641 Scopus citations

Computational coevolution of antiviral drug resistance

Rosin, C. D., Belew, R. K., Morris, G. M., Olson, A. J. & Goodsell, D. S., Jan 1 1998, In : Artificial Life. 4, 1, p. 41-59 19 p.

Research output: Contribution to journalArticle

3 Scopus citations

Interactive modeling of supramolecular assemblies

Macke, T. J., Duncan, B. S., Goodsell, D. S. & Olson, A. J., Jan 1 1998, In : Journal of Molecular Graphics and Modelling. 16, 3, p. 115-120+162-163

Research output: Contribution to journalArticle

6 Scopus citations

Morphology of protein-protein interfaces

Larsen, T. A., Olson, A. J. & Goodsell, D. S., Apr 15 1998, In : Structure. 6, 4, p. 421-427 7 p.

Research output: Contribution to journalArticle

181 Scopus citations

The art of molecular graphics: Color choices in molecular graphics

Goodsell, D. & Gaber, B. P., Dec 1 1998, In : Journal of Molecular Graphics and Modelling. 16, 2, p. 101-103 3 p.

Research output: Contribution to journalShort survey

Theoretical limits of DNA sequence discrimination of polyamides

Walker, W. L., Goodsell, D. S. & Landaw, E. M., Jan 1 1998, p. 270-275. 6 p.

Research output: Contribution to conferencePaper

The theoretical limits of DNA sequence discrimination by linked polyamides

Walker, W. L., Landaw, E. M., Dickerson, R. E. & Goodsell, D. S., Apr 14 1998, In : Proceedings of the National Academy of Sciences of the United States of America. 95, 8, p. 4315-4320 6 p.

Research output: Contribution to journalArticle

8 Scopus citations
1999

Coevolution and subsite decomposition for the design of resistance-evading HIV-1 protease inhibitors

Rosin, C. D., Belew, R. K., Walker, W. L., Morris, G. M., Olson, A. J. & Goodsell, D. S., Mar 19 1999, In : Journal of molecular biology. 287, 1, p. 77-92 16 p.

Research output: Contribution to journalArticle

16 Scopus citations

Coevolutionary analysis of resistance-evading peptidomimetic inhibitors of HIV-1 protease

Rosin, C. D., Belew, R. K., Morris, G. M., Olson, A. J. & Goodsell, D. S., Feb 16 1999, In : Proceedings of the National Academy of Sciences of the United States of America. 96, 4, p. 1369-1374 6 p.

Research output: Contribution to journalArticle

19 Scopus citations