• 28710 Citations
  • 48 h-Index
1985 …2021

Research output per year

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Research Output

'. . . The tyranny of the lattice . . .'

Dickerson, R. E., Goodsell, D. S. & Neidle, S., Jan 1 1994, In : Proceedings of the National Academy of Sciences of the United States of America. 91, 9, p. 3579-3583 5 p.

Research output: Contribution to journalArticle

185 Scopus citations

1,2,3-Triazole as a peptide surrogate in the rapid synthesis of HIV-1 protease inhibitors

Brik, A., Alexandratos, J., Lin, Y. C., Elder, J. H., Olson, A. J., Wlodawer, A., Goodsell, D. S. & Wong, C. H., Jul 1 2005, In : ChemBioChem. 6, 7, p. 1167-1169 3 p.

Research output: Contribution to journalArticle

236 Scopus citations

1994 Molecular Graphics Art Show and Video Show

Goodsell, D., Larsen, T. A. & O'Donnell, T. J., Aug 1 1995, In : Journal of Molecular Graphics. 13, 4, p. 223-234 12 p.

Research output: Contribution to journalArticle

3D molecular models of whole HIV-1 virions generated with cellPACK

Johnson, G. T., Goodsell, D. S., Autin, L., Forli, S., Sanner, M. F. & Olson, A. J., Nov 1 2014, In : Faraday Discussions. 169, p. 23-44 22 p.

Research output: Contribution to journalArticle

20 Scopus citations

A hierarchical model of HIV-1 protease drug resistance.

Goodsell, D. S., 2002, In : Applied bioinformatics. 1, 1, p. 3-12 10 p.

Research output: Contribution to journalReview article

2 Scopus citations
44 Scopus citations

An analysis of a class of DNA sequence reading molecules

Walker, W. L., Goodsell, D. & Landaw, E. M., Jan 1 1998, In : Journal of Computational Biology. 5, 3, p. 571-583 13 p.

Research output: Contribution to journalArticle

2 Scopus citations

Art and Science of the Cellular Mesoscale

Goodsell, D. S., Olson, A. J. & Forli, S., Jun 2020, In : Trends in Biochemical Sciences. 45, 6, p. 472-483 12 p.

Research output: Contribution to journalReview article

Artophagy: The art of autophagy - The Cvt pathway

Goodsell, D. S. & Klionsky, D. J., Jan 1 2010, In : Autophagy. 6, 1, p. 3-6 4 p.

Research output: Contribution to journalReview article

11 Scopus citations

Atomic evidence:The foundations of structural molecular biology

Goodsell, D., Dec 1 2011, In : Science Progress. 94, 4, p. 414-430 17 p.

Research output: Contribution to journalArticle

1 Scopus citations

Augmented reality with tangible auto-fabricated models for molecular biology applications

Gillet, A., Sanner, M., Stoffler, D., Goodsell, D. & Olson, A., Dec 1 2004, IEEE Visualization 2004 - Proceedings, VIS 2004. Rushmeier, H., Turk, G. & Wijk, J. J. (eds.). p. 235-241 7 p. (IEEE Visualization 2004 - Proceedings, VIS 2004).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

33 Scopus citations

AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility

Ravindranath, P. A., Forli, S., Goodsell, D. S., Olson, A. J. & Sanner, M. F., Jan 1 2015, In : PLoS computational biology. 11, 12, e1004586.

Research output: Contribution to journalArticle

46 Scopus citations

Automated docking and the search for HIV protease inhibitors.

Olson, A. J. & Goodsell, D. S., 1998, In : SAR and QSAR in environmental research. 8, 3-4, p. 273-285 13 p.

Research output: Contribution to journalReview article

25 Scopus citations

Automated docking in crystallography: Analysis of the substrates of aconitase

Goodsell, D., Lauble, H., Stout, C. D. & Olson, A. J., Jan 1 1993, In : Proteins: Structure, Function, and Bioinformatics. 17, 1, p. 1-10 10 p.

Research output: Contribution to journalArticle

72 Scopus citations

Automated docking of flexible ligands: Applications of AutoDock

Goodsell, D. S., Morris, G. M. & Olson, A. J., Jan 1 1996, In : Journal of Molecular Recognition. 9, 1, p. 1-5 5 p.

Research output: Contribution to journalArticle

1039 Scopus citations

Automated docking of ligands to an artificial active site: Augmenting crystallographic analysis with computer modeling

Rosenfeld, R. J., Goodsell, D. S., Musah, R. A., Morris, G. M., Goodin, D. B. & Olson, A. J., Aug 1 2003, In : Journal of Computer-Aided Molecular Design. 17, 8, p. 525-536 12 p.

Research output: Contribution to journalArticle

76 Scopus citations

Automated docking of substrates to proteins by simulated annealing

Goodsell, D. & Olson, A. J., Jan 1 1990, In : Proteins: Structure, Function, and Bioinformatics. 8, 3, p. 195-202 8 p.

Research output: Contribution to journalArticle

916 Scopus citations

Automated docking to multiple target structures: Incorporation of protein mobility and structural water heterogeneity in autodock

Österberg, F., Morris, G. M., Sanner, M. F., Olson, A. J. & Goodsell, D., Jan 1 2002, In : Proteins: Structure, Function and Genetics. 46, 1, p. 34-40 7 p.

Research output: Contribution to journalArticle

370 Scopus citations

Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function

Morris, G. M., Goodsell, D. S., Halliday, R. S., Huey, R., Hart, W. E., Belew, R. K. & Olson, A. J., Nov 15 1998, In : Journal of Computational Chemistry. 19, 14, p. 1639-1662 24 p.

Research output: Contribution to journalArticle

7641 Scopus citations

Automated prediction of ligand-binding sites in proteins

Harris, R., Olson, A. J. & Goodsell, D. S., Mar 1 2008, In : Proteins: Structure, Function and Genetics. 70, 4, p. 1506-1517 12 p.

Research output: Contribution to journalArticle

70 Scopus citations

A visual review of the human pathogen Streptococcus pneumoniae

Engholm, D. H., Kilian, M., Goodsell, D. S., Andersen, E. S. & Kjærgaard, R. S., Nov 1 2017, In : FEMS Microbiology Reviews. 41, 6, p. 854-879 26 p.

Research output: Contribution to journalReview article

7 Scopus citations

Bending and curvature calculations in B-DNA

Goodsell, D. S. & Dickerson, R. E., Dec 1 1994, In : Nucleic acids research. 22, 24, p. 5497-5503 7 p.

Research output: Contribution to journalArticle

231 Scopus citations

Binding of an antitumor drug to DNA. Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G

Kopka, M. L., Yoon, C., Goodsell, D., Pjura, P. & Dickerson, R. E., Jun 25 1985, In : Journal of molecular biology. 183, 4, p. 553-563 11 p.

Research output: Contribution to journalArticle

394 Scopus citations

BioEditor - Simplifying macromolecular structure annotation

Yang, P., Craig, P. A., Goodsell, D. & Bourne, P. E., May 1 2003, In : Bioinformatics. 19, 7, p. 897-898 2 p.

Research output: Contribution to journalArticle

8 Scopus citations

Biomolecules and nanotechnology

Goodsell, D. S., Jan 1 2000, In : American Scientist. 88, 3, p. 230-237 8 p.

Research output: Contribution to journalArticle

36 Scopus citations

CellPACK: A virtual mesoscope to model and visualize structural systems biology

Johnson, G. T., Autin, L., Al-Alusi, M., Goodsell, D. S., Sanner, M. F. & Olson, A. J., Jan 1 2014, In : Nature Methods. 12, 1, p. 85-91 7 p.

Research output: Contribution to journalArticle

48 Scopus citations

CellPAINT: Interactive Illustration of Dynamic Mesoscale Cellular Environments

Gardner, A., Autin, L., Barbaro, B., Olson, A. J. & Goodsell, D. S., Nov 1 2018, In : IEEE Computer Graphics and Applications. 38, 6, p. 51-64 14 p., 8617734.

Research output: Contribution to journalArticle

5 Scopus citations

Chapter 7 Molecules in living cells

Goodsell, D. S., Dec 1 1996, In : Principles of Medical Biology. 3, C, p. 173-180 8 p.

Research output: Contribution to journalArticle

Coevolution and subsite decomposition for the design of resistance-evading HIV-1 protease inhibitors

Rosin, C. D., Belew, R. K., Walker, W. L., Morris, G. M., Olson, A. J. & Goodsell, D. S., Mar 19 1999, In : Journal of molecular biology. 287, 1, p. 77-92 16 p.

Research output: Contribution to journalArticle

16 Scopus citations

Coevolutionary analysis of resistance-evading peptidomimetic inhibitors of HIV-1 protease

Rosin, C. D., Belew, R. K., Morris, G. M., Olson, A. J. & Goodsell, D. S., Feb 16 1999, In : Proceedings of the National Academy of Sciences of the United States of America. 96, 4, p. 1369-1374 6 p.

Research output: Contribution to journalArticle

19 Scopus citations

Computational coevolution of antiviral drug resistance

Rosin, C. D., Belew, R. K., Morris, G. M., Olson, A. J. & Goodsell, D. S., Jan 1 1998, In : Artificial Life. 4, 1, p. 41-59 19 p.

Research output: Contribution to journalArticle

3 Scopus citations

Computational docking of biomolecular complexes with autodock

Goodsell, D., Aug 13 2009, In : Cold Spring Harbor Protocols. 4, 5

Research output: Contribution to journalArticle

19 Scopus citations

Computational protein-ligand docking and virtual drug screening with the AutoDock suite

Forli, S., Huey, R., Pique, M. E., Sanner, M. F., Goodsell, D. S. & Olson, A. J., May 1 2016, In : Nature Protocols. 11, 5, p. 905-919 15 p.

Research output: Contribution to journalArticle

258 Scopus citations

Computer-linked autofabricated 3D models for teaching structural biology

Gillet, A., Weghorst, S., Winn, W., Stoffler, D., Sanner, M., Goodsell, D. & Olson, A., Dec 1 2004.

Research output: Contribution to conferencePaper

2 Scopus citations

Covalent docking using autodock: Two-point attractor and flexible side chain methods

Bianco, G., Forli, S., Goodsell, D. S. & Olson, A. J., Jan 1 2016, In : Protein Science. 25, 1, p. 295-301 7 p.

Research output: Contribution to journalArticle

53 Scopus citations

Crystallographic Analysis of C-C-A-A-G-C-T-T-G-G and Its Implications for Bending in B-DNA

Grzeskowiak, K., Goodsell, D. S., Kaczor-Grzeskowiak, M., Cascio, D. & Dickerson, R. E., Jan 1 1993, In : Biochemistry. 32, 34, p. 8923-8931 9 p.

Research output: Contribution to journalArticle

71 Scopus citations

Crystal Structure of a Covalent DNA—Drug Adduct: Anthramycin Bound to C-C-A-A-C-G-T-T-G-G and a Molecular Explanation of Specificity

Kopka, M. L., Goodsell, D. S., Baikalov, I., Grzeskowiak, K., Cascio, D. & Dickerson, R. E., Nov 1 1994, In : Biochemistry. 33, 46, p. 13593-13610 18 p.

Research output: Contribution to journalArticle

113 Scopus citations

Crystal structure of CATGGCCATG and its implications for A-tract bending models

Goodsell, D. S., Kopka, M. L., Cascio, D. & Dickerson, R. E., Jan 1 1993, In : Proceedings of the National Academy of Sciences of the United States of America. 90, 7, p. 2930-2934 5 p.

Research output: Contribution to journalArticle

142 Scopus citations

Crystal Structure of C-T-C-T-C-G-A-G-A-G. Implications for the Structure of the Holliday Junction

Goodsell, D. S., Grzeskowiak, K. & Dickerson, R. E., Jan 1995, In : Biochemistry. 34, 3, p. 1022-1029 8 p.

Research output: Contribution to journalArticle

53 Scopus citations

Cuttlefish: Color Mapping for Dynamic Multi-Scale Visualizations

Waldin, N., Waldner, M., Le Muzic, M., Gröller, E., Goodsell, D. S., Autin, L., Olson, A. J. & Viola, I., Sep 1 2019, In : Computer Graphics Forum. 38, 6, p. 150-164 15 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Defining GC-specificity in the minor groove: Side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G

Kopka, M. L., Goodsell, D. S., Han, G. W., Chiu, T. K., Lown, J. W. & Dickerson, R. E., Jan 1 1997, In : Structure. 5, 8, p. 1033-1046 14 p.

Research output: Contribution to journalArticle

101 Scopus citations

Design of B‐DNA cross‐linking and sequence‐reading molecules

Walker, W. L., Kopka, M. L., Filipowsky, M. E., Dickerson, R. E. & Goodsell, D., Jan 1 1995, In : Biopolymers. 35, 5, p. 543-553 11 p.

Research output: Contribution to journalArticle

15 Scopus citations

Design of stapled DNA-minor-groove-binding molecules with a mutable atom simulated annealing method

Walker, W. L., Kopka, M. L., Dickerson, R. E. & Goodsell, D., Jan 1 1997, In : Journal of Computer-Aided Molecular Design. 11, 6, p. 539-546 8 p.

Research output: Contribution to journalArticle

4 Scopus citations

Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4

Morris, G. M., Goodsell, D. S., Huey, R. & Olson, A. J., Jan 1 1996, In : Journal of Computer-Aided Molecular Design. 10, 4, p. 293-304 12 p.

Research output: Contribution to journalArticle

849 Scopus citations

Docking of 4-oxalocrotonate tautomerase substrates: Implications for the catalytic mechanism

Soares, T. A., Goodsell, D. S., Briggs, J. M., Ferreira, R. & Olson, A. J., Sep 1 1999, In : Biopolymers. 50, 3, p. 319-328 10 p.

Research output: Contribution to journalArticle

24 Scopus citations

Empirical entropie contributions in computational docking: Evaluation in APS reductase complexes

Chang, M. W., Belew, R. K., Carroll, K. S., Olson, A. J. & Goodsell, D. S., Aug 1 2008, In : Journal of Computational Chemistry. 29, 11, p. 1753-1761 9 p.

Research output: Contribution to journalArticle

31 Scopus citations

ePMV embeds molecular modeling into professional animation software environments

Johnson, G. T., Autin, L., Goodsell, D. S., Sanner, M. F. & Olson, A. J., Mar 9 2011, In : Structure. 19, 3, p. 293-303 11 p.

Research output: Contribution to journalArticle

52 Scopus citations

Escherichia coli

Goodsell, D. S., Nov 1 2009, In : Biochemistry and Molecular Biology Education. 37, 6, p. 325-332 8 p.

Research output: Contribution to journalArticle

17 Scopus citations

Estimation of the DNA sequence discriminatory ability of hairpin-linked lexitropsins

Walker, W. L., Landaw, E. M., Dickerson, R. E. & Goodsell, D. S., May 27 1997, In : Proceedings of the National Academy of Sciences of the United States of America. 94, 11, p. 5634-5639 6 p.

Research output: Contribution to journalArticle

21 Scopus citations

Evolutionary analysis of HIV-1 protease inhibitors: Methods for design of inhibitors that evade resistance

Stoffler, D., Sanner, M. F., Morris, G. M., Olson, A. J. & Goodsell, D. S., Jul 1 2002, In : Proteins: Structure, Function and Genetics. 48, 1, p. 63-74 12 p.

Research output: Contribution to journalArticle

18 Scopus citations