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Research Output 1989 2019

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Conference contribution
2016

Modeling convergence of circadian clocks and metabolism

Bae, S. A. & Androulakis, I., Jan 1 2016, Computing and Systems Technology Division 2016 - Core Programming Area at the 2016 AIChE Annual Meeting. AIChE, p. 108-110 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Metabolism
NAD
Clocks
Genes
Salvaging
2015

Asymmetry in signal oscillations contributes to efficiency of periodic systems

Bae, S. A., Acevedo, A. & Androulakis, I., Jan 1 2015, Food, Pharmaceutical and Bioengineering Division 2015 - Core Programming Area at the 2015 AIChE Meeting. AIChE, p. 88-89 2 p. (Food, Pharmaceutical and Bioengineering Division 2015 - Core Programming Area at the 2015 AIChE Meeting; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tumor Suppressor Protein p53
Calcium Signaling
Time varying systems
Names
oscillation

Modeling the dynamics of neuroendocrine-immune interactions in collagen-induced arthritis

Rao, R., Dubois, D., Almon, R., Jusko, W. J. & Androulakis, I., Jan 1 2015, Chemical Engineers in Medicine 2015 - Topical Conference at the 2015 AIChE Annual Meeting. AIChE, p. 122-124 3 p. (Chemical Engineers in Medicine 2015 - Topical Conference at the 2015 AIChE Annual Meeting).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Experimental Arthritis
Collagen
Corticosterone
Rheumatoid Arthritis
Cytokines

Modeling the dynamics of neuroendocrine-immune interactions in collagen-induced arthritis

Rao, R., Dubois, D., Almon, R., Jusko, W. J. & Androulakis, I., Jan 1 2015, Computing and Systems Technology Division 2015 - Core Programming Area at the 2015 AIChE Annual Meeting. AIChE, p. 681-683 3 p. (Computing and Systems Technology Division 2015 - Core Programming Area at the 2015 AIChE Annual Meeting; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Collagen
Cortisol
Immune system
Cartilage
Pathology
2014

Effects of corticosteroids on liver function: Inter-relationships between transcription and translation

Kamisoglu, K., Sukumaran, S., Nouri-Nigjeh, E., Tu, C., Li, J., Zhang, M., Wopperer, S., Yu, H., Qu, J., Almon, R. R., Dubois, D., Jusko, W. J. & Androulakis, I. P., Jan 1 2014, Systems Biology 2014 - Topical Conference at the 2014 AIChE Annual Meeting. AIChE, p. 125-127 3 p. (Systems Biology 2014 - Topical Conference at the 2014 AIChE Annual Meeting).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Transcription
Liver
Adrenal Cortex Hormones

Human metabolic response to systemic inflammation: Concordance between the experimental endotoxemia and clinical cases

Kamisoglu, K., Calvano, S. E., Coyle, S. M., Corbett, S. & Androulakis, I., Jan 1 2014, Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting. AIChE, Vol. 1. 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

endotoxemia
Endotoxemia
inflammation
Inflammation

Integrated analysis of transcriptional and metabolic profiling in human endotoxemia

Kamisoglu, K., Calvano, S. E., Coyle, S. M., Corbett, S. A. & Androulakis, I. P., Jan 1 2014, Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting. AIChE, p. 1077-1078 2 p. (Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

endotoxemia
Endotoxemia
metabolomics
2013

Analysis of regulatory and interaction networks from clusters of co-expressed genes

Yang, E., Misra, A., Maguire, T. J. & Androulakis, I., Dec 1 2013, Clustering Challenges in Biological Networks. p. 53-82 30 p. (Clustering Challenges in Biological Networks).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

genes
gene expression
interactions
hubs
regulators

Effects of coupled dose and rhythm manipulation of plasma cortisol levels on leukocyte transcriptional response to endotoxin in humans

Kamisoglu, K., Sleight, K., Nguyen, T. T., Calvano, S. E., Corbett, S. & Androulakis, I., Jan 1 2013, Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future. AIChE, p. 167-169 3 p. (Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Endotoxins
Hydrocortisone
Plasmas

Temporal metabolic profiling of plasma in response to endotoxemia in humans

Kamisoglu, K., Sleight, K., Calvano, S. E., Corbett, S. & Androulakis, I., Jan 1 2013, Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future. AIChE, p. 301-302 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

endotoxemia
Endotoxemia
metabolomics
Plasmas
2011

(243b) Multiscale variability in human endotoxemia: Circadian, ultradian, and higher frequency rhythms in heart rate variability

Scheff, J. D., Calvano, S. E., Lowry, S. F. & Androulakis, I., Jan 1 2011, Systems Biology - Topical Conference at the 2011 AIChE Annual Meeting. AIChE, p. 19-21 3 p. (Systems Biology - Topical Conference at the 2011 AIChE Annual Meeting).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

(534b) Peripheral clock gene entrainment by cortisol

Mavroudis, P. D., Scheff, J. D., Calvano, S. E., Lowry, S. F. & Androulakis, I., Jan 1 2011, Systems Biology - Topical Conference at the 2011 AIChE Annual Meeting. AIChE, p. 61-64 4 p. (Systems Biology - Topical Conference at the 2011 AIChE Annual Meeting).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cortisol
Hydrocortisone
Clocks
Genes

(692h) Short-term hepatic gene expression profiling following thermal injury

Yang, Q., Orman, M. A., Berthiaume, F., Ierapetritou, M. & Androulakis, I., Jan 1 2011, Systems Biology - Topical Conference at the 2011 AIChE Annual Meeting. AIChE, p. 105-108 4 p. (Systems Biology - Topical Conference at the 2011 AIChE Annual Meeting).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene expression
Hot Temperature

Comparison of performances for diesel fuels and biodiesel in HCCI engine using detailed mechanism with on-the-fly reduction

Zhang, S., Androulakis, I., Ierapetritou, M. & Broadbelt, L. J., Dec 1 2011, 11AIChE - 2011 AIChE Annual Meeting, Conference Proceedings. (11AIChE - 2011 AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biofuels
Diesel fuels
Biodiesel
Ignition
Engines

Comparison of performances for diesel fuels and biodiesel in HCCI engine using detailed mechanism with on-the-fly reduction

Zhang, S., Androulakis, I., Ierapetritou, M. & Broadbelt, L. J., Jan 1 2011, Catalysis and Reaction Engineering Division - Core Programming Topic at the 2011 AIChE Annual Meeting. AIChE, p. 778-780 3 p. (Catalysis and Reaction Engineering Division - Core Programming Topic at the 2011 AIChE Annual Meeting; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biofuels
Diesel fuels
Biodiesel
Engines
performance

Implications of ultradian rhythms in glucocorticoid secret

Scheff, J. D., Kosmides, A. K., Calvano, S. E., Lowry, S. F. & Androulakis, I., Jan 1 2011, Food, Pharmaceutical and Bioengineering Division - Core Programming Topic at the 2011 AIChE Annual Meeting. AIChE, Vol. 2. p. 786-788 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Glucocorticoids

Understanding homeostatic dynamics of the HPA axis using a glucocorticoid pulsatile model

Kosmides, A., Scheff, J. D., Calvano, S. E., Lowry, S. F. & Androulakis, I., Jun 16 2011, 2011 IEEE 37th Annual Northeast Bioengineering Conference, NEBEC 2011. 5778632. (2011 IEEE 37th Annual Northeast Bioengineering Conference, NEBEC 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cortisol
Glucocorticoids
Hydrocortisone
Hormones
Cytokines
2010

Dynamic complexity of the temporal transcriptional regulation program in human endotoxemia

Nguyen, T. T., Foteinou, P. T., Androulakis, I., Calvano, S. E. & Lowry, S. F., Sep 6 2010, 10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010. p. 112-117 6 p. 5521703. (10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Endotoxemia
Gene Regulatory Networks
Essential Genes
Genes
Eukaryota
1 Citation (Scopus)

Effects of triadimefon on the metabolism of cultured hepatocytes

Iyer, V. V., Androulakis, I., Roth, C. & Ierapetritou, M., Sep 6 2010, 10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010. p. 118-123 6 p. 5521704

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fatty acids
Metabolism
Hepatocytes
Fatty Acids
Glucose
1 Citation (Scopus)

Modeling circadian rhythms in inflammation

Scheff, J. D., Androulakis, I., Calvano, S. E. & Lowry, S. F., Sep 6 2010, 10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010. p. 197-202 6 p. 5521689

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Circadian Rhythm
Hormones
Inflammation
Pacemakers
Biological Phenomena
2008

Coregulation analysis of highly coexpressed and non-coexpressed genes with a novel promoter similarity index

Tung, N., Nowakowski, R. & Androulakis, I., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes

Indirect response model of arsenic exposure on gene expression

Ovacik, M. A., Ierapetritou, M., Georgopoulos, P., Welsh, W. & Androulakis, I., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Arsenic
Gene expression

In silico simulation of corticosteroids effect on a nuclear factor - Kb dependent indirect response model of systemic inflammation in peripheral human blood leukocytes

Foteinou, P. T., Calvano, S. E., Lowry, S. F. & Androulakis, I., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

On-the-fly reduction of kinetic mechanisms using element flux analysis

He, K., Androulakis, I. & Ierapetritou, M., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluxes
Kinetics

Optimal corticosteroid treatment for modulating the dynamics of an in vivo human response to endotoxin

Yang, Q., Foteinou, P. T., Calvano, S. E., Lowry, S. F. & Androulakis, I., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Parsing stem cell behaviors on complex biomaterials via high content imaging and modeling

Treiser, M. D., Yang, E., Androulakis, I., Kohn, J., Chen, C. S. & Moghe, P., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biocompatible Materials
Stem cells
Biomaterials
Imaging techniques

Reconstructing transcription factor networks using the living cell array

Yang, E., Androulakis, I. & Yarmush, M., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Transcription factors
Cells
2007
3 Citations (Scopus)

An adaptive approach for coupling detailed chemical kinetics and multidimensional CFD

Liang, L., Stevens, J. G., Farrell, J. T., Huynh, P. T., Androulakis, I. & Ierapetritou, M., Jan 1 2007, 5th US Combustion Meeting 2007. Combustion Institute, p. 1128-1142 15 p. (5th US Combustion Meeting 2007; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

computational fluid dynamics
Reaction kinetics
Computational fluid dynamics
reaction kinetics
Computational efficiency
2006
1 Citation (Scopus)

Assessing the information content of short time series expression data

Yang, E. H. & Androulakis, I., Dec 1 2006, 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'06. p. 5535-5538 4 p. 4029186. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Time series
Sampling
Biological systems
Microarrays
2005

A new adaptive representation of complex kinetic models

Banerjee, I., Ierapetritou, M., Androulakis, I. & Huynh, T. P., Jan 1 2005, 05AIChE: 2005 AIChE Annual Meeting and Fall Showcase, Conference Proceedings. American Institute of Chemical Engineers, (AIChE Annual Meeting Conference Proceedings; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Light velocity
Kinetics
Thermooxidation
Mathematical programming
Flow simulation