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Shantenu Jha

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20012024

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  • Mechanism-centric regulatory network identifies NME2 and MYC programs as markers of Enzalutamide resistance in CRPC

    Panja, S., Truica, M. I., Yu, C. Y., Saggurthi, V., Craige, M. W., Whitehead, K., Tuiche, M. V., Al-Saadi, A., Vyas, R., Ganesan, S., Gohel, S., Coffman, F., Parrott, J. S., Quan, S., Jha, S., Kim, I., Schaeffer, E., Kothari, V., Abdulkadir, S. A. & Mitrofanova, A., Dec 2024, In: Nature communications. 15, 1, 352.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    4 Scopus citations

  • Pathway-based analyses of gene expression profiles at low doses of ionizing radiation

    Luo, X., Niyakan, S., Johnstone, P., McCorkle, S., Park, G., López-Marrero, V., Yoo, S., Dougherty, E. R., Qian, X., Alexander, F. J., Jha, S. & Yoon, B. J., 2024, In: Frontiers in Bioinformatics. 4, 1280971.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Pipelines for automating compliance-based elimination and extension (PACE2): a systematic framework for high-throughput biomolecular materials simulation workflows

    Mushnoori, S. C., Zang, E., Banerjee, A., Hooten, M., Merzky, A., Turilli, M., Jha, S. & Dutt, M., Jan 1 2024, In: JPhys Materials. 7, 1, 015006.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Quantum-centric supercomputing for materials science: A perspective on challenges and future directions

    Alexeev, Y., Amsler, M., Barroca, M. A., Bassini, S., Battelle, T., Camps, D., Casanova, D., Choi, Y. J., Chong, F. T., Chung, C., Codella, C., Córcoles, A. D., Cruise, J., Di Meglio, A., Duran, I., Eckl, T., Economou, S., Eidenbenz, S., Elmegreen, B. & Fare, C. & 108 others, Faro, I., Fernández, C. S., Ferreira, R. N. B., Fuji, K., Fuller, B., Gagliardi, L., Galli, G., Glick, J. R., Gobbi, I., Gokhale, P., de la Puente Gonzalez, S., Greiner, J., Gropp, B., Grossi, M., Gull, E., Healy, B., Hermes, M. R., Huang, B., Humble, T. S., Ito, N., Izmaylov, A. F., Javadi-Abhari, A., Jennewein, D., Jha, S., Jiang, L., Jones, B., de Jong, W. A., Jurcevic, P., Kirby, W., Kister, S., Kitagawa, M., Klassen, J., Klymko, K., Koh, K., Kondo, M., Kürkçüog̃lu, D. M., Kurowski, K., Laino, T., Landfield, R., Leininger, M., Leyton-Ortega, V., Li, A., Lin, M., Liu, J., Lorente, N., Luckow, A., Martiel, S., Martin-Fernandez, F., Martonosi, M., Marvinney, C., Medina, A. C., Merten, D., Mezzacapo, A., Michielsen, K., Mitra, A., Mittal, T., Moon, K., Moore, J., Mostame, S., Motta, M., Na, Y. H., Nam, Y., Narang, P., Ohnishi, Y. Y., Ottaviani, D., Otten, M., Pakin, S., Pascuzzi, V. R., Pednault, E., Piontek, T., Pitera, J., Rall, P., Ravi, G. S., Robertson, N., Rossi, M. A. C., Rydlichowski, P., Ryu, H., Samsonidze, G., Sato, M., Saurabh, N., Sharma, V., Sharma, K., Shin, S., Slessman, G., Steiner, M., Sitdikov, I., Suh, I. S., Switzer, E. D., Tang, W., Thompson, J., Todo, S., Tran, M. C., Trenev, D., Trott, C., Tseng, H. H., Tubman, N. M., Tureci, E., Valiñas, D. G., Vallecorsa, S., Wever, C., Wojciechowski, K., Wu, X., Yoo, S., Yoshioka, N., Yu, V. W. Z., Yunoki, S., Zhuk, S. & Zubarev, D., Nov 2024, In: Future Generation Computer Systems. 160, p. 666-710 45 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    3 Scopus citations

  • #COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol

    Dommer, A., Casalino, L., Kearns, F., Rosenfeld, M., Wauer, N., Ahn, S. H., Russo, J., Oliveira, S., Morris, C., Bogetti, A., Trifan, A., Brace, A., Sztain, T., Clyde, A., Ma, H., Chennubhotla, C., Lee, H., Turilli, M., Khalid, S. & Tamayo-Mendoza, T. & 32 others, Welborn, M., Christensen, A., Smith, D. G. A., Qiao, Z., Sirumalla, S. K., O’Connor, M., Manby, F., Anandkumar, A., Hardy, D., Phillips, J., Stern, A., Romero, J., Clark, D., Dorrell, M., Maiden, T., Huang, L., McCalpin, J., Woods, C., Gray, A., Williams, M., Barker, B., Rajapaksha, H., Pitts, R., Gibbs, T., Stone, J., Zuckerman, D. M., Mulholland, A. J., Miller, T., Jha, S., Ramanathan, A., Chong, L. & Amaro, R. E., Jan 2023, In: International Journal of High Performance Computing Applications. 37, 1, p. 28-44 17 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    30 Scopus citations
View all 186 Research outputs