Find Research Outputs

2019

Airway smooth muscle cells are insensitive to the anti-proliferative effects of corticosteroids: The novel role of insulin growth factor binding Protein-1 in asthma

Bui, H., Amrani, Y., Deeney, B., Panettieri, R. & Tliba, O., Jul 1 2019, In : Immunobiology. 224, 4, p. 490-496 7 p.

Research output: Contribution to journalArticle

Smooth Muscle Myocytes
Intercellular Signaling Peptides and Proteins
Carrier Proteins
Adrenal Cortex Hormones
Mitogens
1 Citation (Scopus)

Airway smooth muscle-specific transcriptomic signatures of glucocorticoid exposure

Kan, M., Koziol-White, C., Shumyatcher, M., Johnson, M., Jester, W., Panettieri, R. A. & Himes, B. E., Jan 1 2019, In : American journal of respiratory cell and molecular biology. 61, 1, p. 110-120 11 p.

Research output: Contribution to journalArticle

Open Access
Glucocorticoids
Smooth Muscle
Muscle
Asthma
Tissue Donors
Translational Medical Research
Physical Therapists
Documentation
Outcome Assessment (Health Care)
Focus Groups
2 Citations (Scopus)
Translational Medical Research
Physical Therapists
Inpatients
Rehabilitation
Outcome Assessment (Health Care)
4 Citations (Scopus)

A laboratory medicine best practices systematic review and meta-analysis of nucleic acid amplification tests (NAATs) and algorithms including NAATs for the diagnosis of clostridioides (Clostridium) difficile in adults

Kraft, C. S., Parrott, J. S., Cornish, N. E., Rubinstein, M. L., Weissfeld, A. S., McNult, P., Nachamkin, I., Humphries, R. M., Kirn, T. J., Bard, J. D., Lutgring, J. D., Gullett, J. C., Bittencourt, C. E., Benson, S., Bobenchik, A. M., Sautter, R. L., Baselski, V., Atlas, M. C., Marlowe, E. M., Miller, N. S. & 4 others, Fischer, M., Richter, S. S., Gilligan, P. & Snyder, J. W., Jul 2019, In : Clinical microbiology reviews. 32, 3, e00032-18.

Research output: Contribution to journalArticle

Open Access
Nucleic Acid Amplification Techniques
Clostridium difficile
Glutamate Dehydrogenase
Practice Guidelines
Meta-Analysis

Alcohol exposure alters pre-mRNA splicing of antiapoptotic Mcl-1L isoform and induces apoptosis in neural progenitors and immature neurons

Donadoni, M., Cicalese, S., Sarkar, D. K., Chang, S. L. & Sariyer, I. K., Jun 1 2019, In : Cell Death and Disease. 10, 6, 447.

Research output: Contribution to journalArticle

Open Access
RNA Precursors
Alternative Splicing
Protein Isoforms
Ethanol
Alcohols
2 Citations (Scopus)

Alcohol withdrawal drives depressive behaviors by activating neurons in the rostromedial tegmental nucleus

Fu, R., Zuo, W., Shiwalkar, N., Mei, Q., Fan, Q., Chen, X., Li, J., Bekker, A. & Ye, J., Jul 1 2019, In : Neuropsychopharmacology. 44, 8, p. 1464-1475 12 p.

Research output: Contribution to journalArticle

Ventral Tegmental Area
Anhedonia
Alcohols
Depression
Neurons

A legacy of exclusion: The geopolitics of immigration and latinas/os in the south

Matos, Y., Jan 1 2019, In : Labor: Studies in Working-Class History. 16, 3, p. 87-93 7 p.

Research output: Contribution to journalArticle

Open Access
geopolitics
immigration
exclusion
migration
history

A letter from the new editor-in-chief to the editorial board

Guo, Z. & Enhanced Heat, J., Jan 1 2019, In : Journal of Enhanced Heat Transfer. 26, 1, p. V-VII

Research output: Contribution to journalEditorial

1 Citation (Scopus)

A ligand motif enables differential vascular targeting of endothelial junctions between brain and retina

Tang, F. H. F., Staquicini, F. I., Teixeira, A. A. R., Michaloski, J. S., Namiyama, G. M., Taniwaki, N. N., Setubal, J. C., Da Silva, A. M., Sidman, R. L., Pasqualini, R., Arap, W. & Giordano, R. J., Feb 5 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 6, p. 2300-2305 6 p.

Research output: Contribution to journalArticle

Blood Vessels
Retina
Ligands
Peptides
Brain

A lipid site shapes the agonist response of a pentameric ligand-gated ion channel

Hénault, C. M., Govaerts, C., Spurny, R., Brams, M., Estrada-Mondragon, A., Lynch, J., Bertrand, D., Pardon, E., Evans, G. L., Woods, K., Elberson, B. W., Cuello, L. G., Brannigan, G., Nury, H., Steyaert, J., Baenziger, J. E. & Ulens, C., Dec 1 2019, In : Nature Chemical Biology. 15, 12, p. 1156-1164 9 p.

Research output: Contribution to journalArticle

Ligand-Gated Ion Channels
Erwinia
Lipids
Phospholipids
Glycine Receptors

Allele-specific expression and high-throughput reporter assay reveal functional genetic variants associated with alcohol use disorders

Rao, X., Thapa, K. S., Chen, A. B., Lin, H., Gao, H., Reiter, J. L., Hargreaves, K. A., Ipe, J., Lai, D., Xuei, X., Wang, Y., Gu, H., Kapoor, M., Farris, S. P., Tischfield, J., Foroud, T., Goate, A. M., Skaar, T. C., Mayfield, R. D., Edenberg, H. J. & 1 others, Liu, Y., Jan 1 2019, (Accepted/In press) In : Molecular psychiatry.

Research output: Contribution to journalArticle

Open Access
Alleles
Single Nucleotide Polymorphism
Alcohols
Genome-Wide Association Study
3' Untranslated Regions
1 Citation (Scopus)

Alleviating poverty or discontent: The impact of social assistance on Chinese citizens’ views of government

Huang, X. & Gao, Q., Feb 1 2019, In : China: An International Journal. 17, 1, p. 76-95 20 p.

Research output: Contribution to journalArticle

social assistance
poverty
citizen
China
political impact
1 Citation (Scopus)

Alleviating urban heat island effect using high-conductivity permeable concrete pavement

Chen, J., Chu, R., Wang, H., Zhang, L., Chen, X. & Du, Y., Nov 10 2019, In : Journal of Cleaner Production. 237, 117722.

Research output: Contribution to journalArticle

Concrete pavements
heat island
pavement
Thermal effects
conductivity
Open Access
Physiological Adaptation
Glucocorticoids
Allostasis
Circadian Clocks
Periodicity
reconstruction
video
Trajectories
traffic
model analysis
1 Citation (Scopus)

Alpha-1 Antitrypsin Deficiency Liver Disease, Mutational Homogeneity Modulated by Epigenetic Heterogeneity With Links to Obesity

Wang, L., Marek, G. W., Hlady, R. A., Wagner, R. T., Zhao, X., Clark, V. C., Fan, A. X., Liu, C., Brantly, M. & Robertson, K. D., Jul 2019, In : Hepatology. 70, 1, p. 51-66 16 p.

Research output: Contribution to journalArticle

alpha 1-Antitrypsin Deficiency
Deficiency Diseases
Epigenomics
5-Methylcytosine
Liver Diseases

Alpha-band desynchronization reflects memory-specific processes during visual change detection

Erickson, M. A., Smith, D., Albrecht, M. A. & Silverstein, S., Nov 1 2019, In : Psychophysiology. 56, 11, e13442.

Research output: Contribution to journalArticle

Short-Term Memory
Electroencephalography
Color
Healthy Volunteers
Electrodes

Alpha-carboxynucleoside phosphonates: Direct-acting inhibitors of viral DNA polymerases

Balzarini, J., Ford, A., Maguire, N. M., John, J., Das, K., Arnold, E., Dehaen, W. & Maguire, A., Jan 1 2019, In : Future Medicinal Chemistry. 11, 2, p. 137-154 18 p.

Research output: Contribution to journalReview article

Nucleic Acid Synthesis Inhibitors
Organophosphonates
Viral DNA
DNA-Directed DNA Polymerase
Nucleosides
Biota
Superfund
Polychlorinated Biphenyls
Dermatoglyphics
Ports and harbors
2 Citations (Scopus)
Thalamus
Hippocampus
Magnetic Resonance Imaging
Percussion
Diffusion Tensor Imaging

Alterations to the esophageal microbiome associated with progression from Barrett's esophagus to esophageal adenocarcinoma

Snider, E. J., Compres, G., Freedberg, D. E., Khiabanian, H., Nobel, Y. R., Stump, S., Uhlemann, A. C., Lightdale, C. J. & Abrams, J. A., Jan 1 2019, In : Cancer Epidemiology Biomarkers and Prevention. 28, 10, p. 1687-1693 7 p.

Research output: Contribution to journalArticle

Barrett Esophagus
Microbiota
Adenocarcinoma
Endoscopy
Veillonella
1 Citation (Scopus)

ALYREF links 3′-end processing to nuclear export of non-polyadenylated mRNAs

Fan, J., Wang, K., Du, X., Wang, J., Chen, S., Wang, Y., Shi, M., Zhang, L., Wu, X., Zheng, D., Wang, C., Wang, L., Tian, B., Li, G., Zhou, Y. & Cheng, H., May 2 2019, In : EMBO Journal. 38, 9, e99910.

Research output: Contribution to journalArticle

Cell Nucleus Active Transport
Histones
U7 Small Nuclear Ribonucleoproteins
Messenger RNA
Processing
2 Citations (Scopus)

Ambient-Pressure X-ray Photoelectron Spectroscopy Characterization of Radiation-Induced Chemistries of Organotin Clusters

Diulus, J. T., Frederick, R. T., Li, M., Hutchison, D. C., Olsen, M. R., Lyubinetsky, I., Árnadóttir, L., Garfunkel, E., Nyman, M., Ogasawara, H. & Herman, G. S., Jan 16 2019, In : ACS Applied Materials and Interfaces. 11, 2, p. 2526-2534 9 p.

Research output: Contribution to journalArticle

X ray photoelectron spectroscopy
Radiation
Photoresists
Photolithography
Partial pressure

A metamodeling framework for quantifying health damages of power grid expansion plans

Rodgers, M. D., Coit, D. W., Felder, F. A. & Carlton, A. G., May 2 2019, In : International journal of environmental research and public health. 16, 10, 1857.

Research output: Contribution to journalArticle

Open Access
Health
Electricity
Costs and Cost Analysis
United States Environmental Protection Agency
Administrative Personnel

A Method of Aggregating Environmental DNA for

Valentin, R., Lockwood, J. & Fonseca, D., Jan 2019

Research output: Innovation

DNA
Halyomorpha halys
methodology
invasive species
monitoring
1 Citation (Scopus)

A Methodology for Studying Organizational Performance: A Multistate Survey of Front-line Providers

Lasater, K. B., Jarrin, O., Aiken, L. H., McHugh, M. D., Sloane, D. M. & Smith, H. L., Sep 1 2019, In : Medical Care. 57, 9, p. 742-749 8 p.

Research output: Contribution to journalArticle

Nurses
Hospital Administrators
Surveys and Questionnaires
Safety
Population

A method to deliver patterned electrical impulses to Schwann cells cultured on an artificial axon

Merolli, A., Mao, Y., Voronin, G., Steele, J., Murthy, N. & Kohn, J., Jun 1 2019, In : Neural Regeneration Research. 14, 6, p. 1052-1059 8 p.

Research output: Contribution to journalArticle

Open Access
Schwann Cells
Axons
Peripheral Nerves
Neurons
Technology
2 Citations (Scopus)

A microfluidic 3D hepatocyte chip for hepatotoxicity testing of nanoparticles

Li, L., Gokduman, K., Gokaltun, A., Yarmush, M. & Usta, O. B., Aug 1 2019, In : Nanomedicine. 14, 16, p. 2209-2226 18 p.

Research output: Contribution to journalArticle

Microfluidics
Nanoparticles
Hepatocytes
Iron oxides
Testing

A microfluidic patterned model of non-alcoholic fatty liver disease: Applications to disease progression and zonation

Bulutoglu, B., Rey-Bedón, C., Kang, Y. B., Mert, S., Yarmush, M. & Usta, O. B., Jan 1 2019, In : Lab on a Chip. 19, 18, p. 3022-3031 10 p.

Research output: Contribution to journalArticle

Microfluidics
Liver
Disease Progression
Fatty acids
Lipids
25 Citations (Scopus)

A microfoundations approach to studying innovation in multinational subsidiaries

Nuruzzaman, N., Gaur, A. S. & Sambharya, R. B., Feb 1 2019, In : Global Strategy Journal. 9, 1, p. 92-116 25 p.

Research output: Contribution to journalArticle

Subsidiaries
Multinational subsidiary
Microfoundations
Innovation
Multinational enterprises

A microphysiological model of the bronchial airways reveals the interplay of mechanical and biochemical signals in bronchospasm

Kilic, O., Yoon, A., Shah, S. R., Yong, H. M., Ruiz-Valls, A., Chang, H., Panettieri, R., Liggett, S. B., Quiñones-Hinojosa, A., An, S. S. & Levchenko, A., Jul 1 2019, In : Nature biomedical engineering. 3, 7, p. 532-544 13 p.

Research output: Contribution to journalArticle

Bronchial Spasm
Asthma
Smooth Muscle
Epithelial Cells
Molecular Models

A milled microdevice to advance glia-mediated therapies in the adult nervous system

Peña, J. S., Robles, D., Zhang, S. & Vazquez, M., Aug 1 2019, In : Micromachines. 10, 8, 513.

Research output: Contribution to journalArticle

Open Access
Neurology
Neuroglia
Adhesion
Physiology
Photolithography
1 Citation (Scopus)

A mixed-methods study of women’s sanitation utilization in informal settlements in Kenya

Winter, S. C., Dreibelbis, R., Dzombo, M. N. & Barchi, F., Mar 2019, In : PloS one. 14, 3, e0214114.

Research output: Contribution to journalArticle

Open Access
Sanitation
Kenya
sanitation
methodology
Pathogens

Amniotic Band Syndrome: A Multidisciplinary Care Approach to the Treatment of a Rare Case

Mukherjee, P., Natera, M., Drew, H. & Creanga, A., Jan 1 2019, In : Cleft Palate-Craniofacial Journal. 56, 1, p. 105-109 5 p.

Research output: Contribution to journalArticle

Amniotic Band Syndrome
Tooth
Impacted Tooth
Syndactyly
Cone-Beam Computed Tomography

A model predictive control based iterative trajectory optimization method for systems with state-like disturbances

Edmonds, M. & Yi, J., Jul 2019, 2019 American Control Conference, ACC 2019. Institute of Electrical and Electronics Engineers Inc., p. 1635-1640 6 p. 8814598. (Proceedings of the American Control Conference; vol. 2019-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Model predictive control
Trajectories
Fluids
Iterative methods
Landing

A Molecular Assay Allows the Simultaneous Detection of 12 Fungi Causing Fruit Rot in Cranberry

Conti, M., Cinget, B., Vivancos, J., Oudemans, P. & Bélanger, R. R., Nov 1 2019, In : Plant disease. 103, 11, p. 2843-2850 8 p.

Research output: Contribution to journalArticle

cranberries
fungi
fruits
assays
Phacidiaceae
2 Citations (Scopus)

A molecular reconstruction approach to site-based 3D-RISM and comparison to GIST hydration thermodynamic maps in an enzyme active site

Nguyen, C., Yamazaki, T., Kovalenko, A., Case, D. A., Gilson, M. K., Kurtzman, T. & Luchko, T., Jan 1 2019, In : PloS one. 14, 7, e0219473.

Research output: Contribution to journalArticle

Open Access
Solvation
Thermodynamics
active sites
thermodynamics
Hydration
4 Citations (Scopus)

A Monte Carlo model with equipotential approximation and tunneling resistance for the electrical conductivity of carbon nanotube polymer composites

Fang, C., Zhang, J., Chen, X. & Weng, G. J., May 2019, In : Carbon. 146, p. 125-138 14 p.

Research output: Contribution to journalArticle

Carbon Nanotubes
Carbon nanotubes
Polymers
Composite materials
Fillers
2 Citations (Scopus)

A more robust gut microbiota in calorie-restricted mice is associated with attenuated intestinal injury caused by the chemotherapy drug cyclophosphamide

Liu, T., Wu, Y., Wang, L., Pang, X., Zhao, L., Yuan, H. & Zhang, C., Mar 1 2019, In : mBio. 10, 2, e02903-18.

Research output: Contribution to journalArticle

Open Access
Cyclophosphamide
Drug Therapy
Wounds and Injuries
Mucositis
Pharmaceutical Preparations

Amplifying mTORC2 signals through AMPK during energetic stress

Jacinto, E., Jun 11 2019, In : Science signaling. 12, 585, eaax5855.

Research output: Contribution to journalArticle

AMP-Activated Protein Kinases
Metabolism
Cell Survival
Intercellular Signaling Peptides and Proteins
Cells
4 Citations (Scopus)

A multi-model approach to understanding the role of Pacific sardine in the California Current food web

Kaplan, I. C., Francis, T. B., Punt, A. E., Koehn, L. E., Curchitser, E., Hurtado-Ferro, F., Johnson, K. F., Lluch-Cota, S. E., Sydeman, W. J., Essington, T. E., Taylor, N., Holsman, K., MacCall, A. D. & Levin, P. S., Jan 1 2019, In : Marine Ecology Progress Series. 617-618, p. 307-321 15 p.

Research output: Contribution to journalArticle

Open Access
Sardinops sagax
food webs
food web
sardines
ecosystems
4 Citations (Scopus)

Amyloid Plaques of Alzheimer’s Disease as Hotspots of Glutamatergic Activity

Ovsepian, S. V., O’Leary, V. B., Zaborszky, L., Ntziachristos, V. & Dolly, J. O., Aug 1 2019, In : Neuroscientist. 25, 4, p. 288-297 10 p.

Research output: Contribution to journalArticle

Amyloid Plaques
Alzheimer Disease
Glutamic Acid
Synaptic Vesicles
Memory Disorders

An adaptive thresholding-based process variability monitoring

Abdella, G. M., Kim, J., Kim, S., Al-Khalifa, K. N., Jeong, M-K., Hamouda, A. M. & Elsayed, E., Jul 3 2019, In : Journal of Quality Technology. 51, 3, p. 242-256 15 p.

Research output: Contribution to journalArticle

Process monitoring
Covariance matrix
Monitoring
Tuning
Semiconductor materials

An age control transport protocol for delivering fresh updates in the internet-of-things

Shreedhar, T., Kaul, S. K. & Yates, R. D., Jun 2019, 20th IEEE International Symposium on A World of Wireless, Mobile and Multimedia Networks, WoWMoM 2019. Institute of Electrical and Electronics Engineers Inc., 8793011. (20th IEEE International Symposium on A World of Wireless, Mobile and Multimedia Networks, WoWMoM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Network protocols
Internet
Internet of things
Monitoring
Experiments

An algebraic formulation of the locality principle in renormalisation

Clavier, P., Guo, L., Paycha, S. & Zhang, B., Jun 15 2019, In : European Journal of Mathematics. 5, 2, p. 356-394 39 p.

Research output: Contribution to journalArticle

Locality
Renormalization
Formulation
Factorization
Cone

An algebraic study of multivariable integration and linear substitution

Rosenkranz, M., Gao, X. & Guo, L., Nov 1 2019, In : Journal of Algebra and its Applications. 18, 11, 1950207.

Research output: Contribution to journalArticle

Substitution
Substitution reactions
Operator
Bialgebra
Algebraic Theory
1 Citation (Scopus)

An algorithmic separating hyperplane theorem and its applications

Kalantari, B., Mar 15 2019, In : Discrete Applied Mathematics. 256, p. 59-82 24 p.

Research output: Contribution to journalArticle

Hyperplane
Iteration
Triangle
Theorem
Pivot
16 Citations (Scopus)

An alternative mitophagy pathway mediated by Rab9 protects the heart against ischemia

Saito, T., Nah, J., Oka, S. I., Mukai, R., Monden, Y., Maejima, Y., Ikeda, Y., Sciarretta, S., Liu, T., Li, H., Baljinnyam, E., Fraidenraich, D., Fritzky, L., Zhai, P., Ichinose, S., Isobe, M., Hsu, C. P., Kundu, M. & Sadoshima, J., Feb 1 2019, In : Journal of Clinical Investigation. 129, 2, p. 802-819 18 p.

Research output: Contribution to journalArticle

Mitochondrial Degradation
Autophagy
Ischemia
Mitochondria
Dynamins

Analysing the policy space for the promotion of healthy, sustainable edible oil consumption in India

Cuevas, S., Downs, S., Ghosh-Jerath, S., Aafrin & Shankar, B., Jan 1 2019, (Accepted/In press) In : Public Health Nutrition.

Research output: Contribution to journalArticle

promotion
India
oils
nutrition
oil