Find Research Outputs

2019

Airway smooth muscle cells are insensitive to the anti-proliferative effects of corticosteroids: The novel role of insulin growth factor binding Protein-1 in asthma

Bui, H., Amrani, Y., Deeney, B., Panettieri, R. & Tliba, O., Jul 1 2019, In : Immunobiology. 224, 4, p. 490-496 7 p.

Research output: Contribution to journal › Article

Smooth Muscle Myocytes

Intercellular Signaling Peptides and Proteins

Carrier Proteins

Adrenal Cortex Hormones

Mitogens

1 Citation (Scopus)

Airway smooth muscle-specific transcriptomic signatures of glucocorticoid exposure

Kan, M., Koziol-White, C., Shumyatcher, M., Johnson, M., Jester, W., Panettieri, R. A. & Himes, B. E., Jan 1 2019, In : American journal of respiratory cell and molecular biology. 61, 1, p. 110-120 11 p.

Research output: Contribution to journal › Article

Open Access

Glucocorticoids

Smooth Muscle

Muscle

Asthma

Tissue Donors

A Knowledge Translation Intervention Designed and Implemented by a Knowledge Broker Improved Documented Use of Gait Speed: A Mixed-Methods Study

Romney, W., Salbach, N., Parrott, J. S. & Deutsch, J. E., Jan 1 2019, (Accepted/In press) In : Journal of Geriatric Physical Therapy.

Research output: Contribution to journal › Article

Translational Medical Research

Physical Therapists

Documentation

Outcome Assessment (Health Care)

Focus Groups

2 Citations (Scopus)

A knowledge translation intervention designed using audit and feedback and the Theoretical Domains Framework for physical therapists working in inpatient rehabilitation: A case report

Romney, W., Salbach, N., Parrott, J. S. & Deutsch, J., Jul 3 2019, In : Physiotherapy Theory and Practice. 35, 7, p. 686-702 17 p.

Research output: Contribution to journal › Article

Translational Medical Research

Physical Therapists

Inpatients

Rehabilitation

Outcome Assessment (Health Care)

4 Citations (Scopus)

A laboratory medicine best practices systematic review and meta-analysis of nucleic acid amplification tests (NAATs) and algorithms including NAATs for the diagnosis of clostridioides (Clostridium) difficile in adults

Kraft, C. S., Parrott, J. S., Cornish, N. E., Rubinstein, M. L., Weissfeld, A. S., McNult, P., Nachamkin, I., Humphries, R. M., Kirn, T. J., Bard, J. D., Lutgring, J. D., Gullett, J. C., Bittencourt, C. E., Benson, S., Bobenchik, A. M., Sautter, R. L., Baselski, V., Atlas, M. C., Marlowe, E. M., Miller, N. S. & 4 others, Fischer, M., Richter, S. S., Gilligan, P. & Snyder, J. W., Jul 2019, In : Clinical microbiology reviews. 32, 3, e00032-18.

Research output: Contribution to journal › Article

Open Access

Nucleic Acid Amplification Techniques

Clostridium difficile

Glutamate Dehydrogenase

Practice Guidelines

Meta-Analysis

Alcohol exposure alters pre-mRNA splicing of antiapoptotic Mcl-1L isoform and induces apoptosis in neural progenitors and immature neurons

Donadoni, M., Cicalese, S., Sarkar, D. K., Chang, S. L. & Sariyer, I. K., Jun 1 2019, In : Cell Death and Disease. 10, 6, 447.

Research output: Contribution to journal › Article

Open Access

RNA Precursors

Alternative Splicing

Protein Isoforms

Ethanol

Alcohols

2 Citations (Scopus)

Alcohol withdrawal drives depressive behaviors by activating neurons in the rostromedial tegmental nucleus

Fu, R., Zuo, W., Shiwalkar, N., Mei, Q., Fan, Q., Chen, X., Li, J., Bekker, A. & Ye, J., Jul 1 2019, In : Neuropsychopharmacology. 44, 8, p. 1464-1475 12 p.

Research output: Contribution to journal › Article

Ventral Tegmental Area

Anhedonia

Alcohols

Depression

Neurons

A legacy of exclusion: The geopolitics of immigration and latinas/os in the south

Matos, Y., Jan 1 2019, In : Labor: Studies in Working-Class History. 16, 3, p. 87-93 7 p.

Research output: Contribution to journal › Article

Open Access

geopolitics

immigration

exclusion

migration

history

A letter from the new editor-in-chief to the editorial board

Guo, Z. & Enhanced Heat, J., Jan 1 2019, In : Journal of Enhanced Heat Transfer. 26, 1, p. V-VII

Research output: Contribution to journal › Editorial

1 Citation (Scopus)

A ligand motif enables differential vascular targeting of endothelial junctions between brain and retina

Tang, F. H. F., Staquicini, F. I., Teixeira, A. A. R., Michaloski, J. S., Namiyama, G. M., Taniwaki, N. N., Setubal, J. C., Da Silva, A. M., Sidman, R. L., Pasqualini, R., Arap, W. & Giordano, R. J., Feb 5 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 6, p. 2300-2305 6 p.

Research output: Contribution to journal › Article

Blood Vessels

Retina

Ligands

Peptides

Brain

A lipid site shapes the agonist response of a pentameric ligand-gated ion channel

Hénault, C. M., Govaerts, C., Spurny, R., Brams, M., Estrada-Mondragon, A., Lynch, J., Bertrand, D., Pardon, E., Evans, G. L., Woods, K., Elberson, B. W., Cuello, L. G., Brannigan, G., Nury, H., Steyaert, J., Baenziger, J. E. & Ulens, C., Dec 1 2019, In : Nature Chemical Biology. 15, 12, p. 1156-1164 9 p.

Research output: Contribution to journal › Article

Ligand-Gated Ion Channels

Erwinia

Lipids

Phospholipids

Glycine Receptors

Allele-specific expression and high-throughput reporter assay reveal functional genetic variants associated with alcohol use disorders

Rao, X., Thapa, K. S., Chen, A. B., Lin, H., Gao, H., Reiter, J. L., Hargreaves, K. A., Ipe, J., Lai, D., Xuei, X., Wang, Y., Gu, H., Kapoor, M., Farris, S. P., Tischfield, J., Foroud, T., Goate, A. M., Skaar, T. C., Mayfield, R. D., Edenberg, H. J. & 1 others, Liu, Y., Jan 1 2019, (Accepted/In press) In : Molecular psychiatry.

Research output: Contribution to journal › Article

Open Access

Alleles

Single Nucleotide Polymorphism

Alcohols

Genome-Wide Association Study

3' Untranslated Regions

1 Citation (Scopus)

Alleviating poverty or discontent: The impact of social assistance on Chinese citizens’ views of government

Huang, X. & Gao, Q., Feb 1 2019, In : China: An International Journal. 17, 1, p. 76-95 20 p.

Research output: Contribution to journal › Article

social assistance

poverty

citizen

China

political impact

1 Citation (Scopus)

Alleviating urban heat island effect using high-conductivity permeable concrete pavement

Chen, J., Chu, R., Wang, H., Zhang, L., Chen, X. & Du, Y., Nov 10 2019, In : Journal of Cleaner Production. 237, 117722.

Research output: Contribution to journal › Article

Concrete pavements

heat island

pavement

Thermal effects

conductivity

Allostatic adaptation and personalized physiological trade-offs in the circadian regulation of the HPA axis: A mathematical modeling approach

Rao, R. & Androulakis, I., Aug 1 2019, In : Scientific reports. 9, 1, 1 p.

Research output: Contribution to journal › Article

Open Access

Physiological Adaptation

Glucocorticoids

Allostasis

Circadian Clocks

Periodicity

A longitudinal scanline based vehicle trajectory reconstruction method for high-angle traffic video

Zhang, T. & Jin, J., Jun 1 2019, In : Transportation Research Part C: Emerging Technologies. 103, p. 104-128 25 p.

Research output: Contribution to journal › Article

reconstruction

video

Trajectories

traffic

model analysis

1 Citation (Scopus)

Alpha-1 Antitrypsin Deficiency Liver Disease, Mutational Homogeneity Modulated by Epigenetic Heterogeneity With Links to Obesity

Wang, L., Marek, G. W., Hlady, R. A., Wagner, R. T., Zhao, X., Clark, V. C., Fan, A. X., Liu, C., Brantly, M. & Robertson, K. D., Jul 2019, In : Hepatology. 70, 1, p. 51-66 16 p.

Research output: Contribution to journal › Article

alpha 1-Antitrypsin Deficiency

Deficiency Diseases

Epigenomics

5-Methylcytosine

Liver Diseases

Alpha-band desynchronization reflects memory-specific processes during visual change detection

Erickson, M. A., Smith, D., Albrecht, M. A. & Silverstein, S., Nov 1 2019, In : Psychophysiology. 56, 11, e13442.

Research output: Contribution to journal › Article

Short-Term Memory

Electroencephalography

Color

Healthy Volunteers

Electrodes

Alpha-carboxynucleoside phosphonates: Direct-acting inhibitors of viral DNA polymerases

Balzarini, J., Ford, A., Maguire, N. M., John, J., Das, K., Arnold, E., Dehaen, W. & Maguire, A., Jan 1 2019, In : Future Medicinal Chemistry. 11, 2, p. 137-154 18 p.

Research output: Contribution to journal › Review article

Nucleic Acid Synthesis Inhibitors

Organophosphonates

Viral DNA

DNA-Directed DNA Polymerase

Nucleosides

Alterations in fingerprints of polychlorinated biphenyls in benthic biota at the Portland Harbor Superfund Site (Oregon, USA) suggest metabolism

Rodenburg, L. & Delistraty, D. A., May 1 2019, In : Chemosphere. 223, p. 74-82 9 p.

Research output: Contribution to journal › Article

Biota

Superfund

Polychlorinated Biphenyls

Dermatoglyphics

Ports and harbors

2 Citations (Scopus)

Alterations of Parenchymal Microstructure, Neuronal Connectivity, and Cerebrovascular Resistance at Adolescence after Mild-to-Moderate Traumatic Brain Injury in Early Development

Parent, M., Li, Y., Santhakumar, V., Hyder, F., Sanganahalli, B. G. & Kannurpatti, S. S., Feb 15 2019, In : Journal of neurotrauma. 36, 4, p. 601-608 8 p.

Research output: Contribution to journal › Article

Thalamus

Hippocampus

Magnetic Resonance Imaging

Percussion

Diffusion Tensor Imaging

Alterations to the esophageal microbiome associated with progression from Barrett's esophagus to esophageal adenocarcinoma

Snider, E. J., Compres, G., Freedberg, D. E., Khiabanian, H., Nobel, Y. R., Stump, S., Uhlemann, A. C., Lightdale, C. J. & Abrams, J. A., Jan 1 2019, In : Cancer Epidemiology Biomarkers and Prevention. 28, 10, p. 1687-1693 7 p.

Research output: Contribution to journal › Article

Barrett Esophagus

Microbiota

Adenocarcinoma

Endoscopy

Veillonella

1 Citation (Scopus)

ALYREF links 3′-end processing to nuclear export of non-polyadenylated mRNAs

Fan, J., Wang, K., Du, X., Wang, J., Chen, S., Wang, Y., Shi, M., Zhang, L., Wu, X., Zheng, D., Wang, C., Wang, L., Tian, B., Li, G., Zhou, Y. & Cheng, H., May 2 2019, In : EMBO Journal. 38, 9, e99910.

Research output: Contribution to journal › Article

Cell Nucleus Active Transport

Histones

U7 Small Nuclear Ribonucleoproteins

Messenger RNA

Processing

2 Citations (Scopus)

Ambient-Pressure X-ray Photoelectron Spectroscopy Characterization of Radiation-Induced Chemistries of Organotin Clusters

Diulus, J. T., Frederick, R. T., Li, M., Hutchison, D. C., Olsen, M. R., Lyubinetsky, I., Árnadóttir, L., Garfunkel, E., Nyman, M., Ogasawara, H. & Herman, G. S., Jan 16 2019, In : ACS Applied Materials and Interfaces. 11, 2, p. 2526-2534 9 p.

Research output: Contribution to journal › Article

X ray photoelectron spectroscopy

Radiation

Photoresists

Photolithography

Partial pressure

A metamodeling framework for quantifying health damages of power grid expansion plans

Rodgers, M. D., Coit, D. W., Felder, F. A. & Carlton, A. G., May 2 2019, In : International journal of environmental research and public health. 16, 10, 1857.

Research output: Contribution to journal › Article

Open Access

Health

Electricity

Costs and Cost Analysis

United States Environmental Protection Agency

Administrative Personnel

A Method of Aggregating Environmental DNA for

Valentin, R., Lockwood, J. & Fonseca, D., Jan 2019

Research output: Innovation

DNA

Halyomorpha halys

methodology

invasive species

monitoring

1 Citation (Scopus)

A Methodology for Studying Organizational Performance: A Multistate Survey of Front-line Providers

Lasater, K. B., Jarrin, O., Aiken, L. H., McHugh, M. D., Sloane, D. M. & Smith, H. L., Sep 1 2019, In : Medical Care. 57, 9, p. 742-749 8 p.

Research output: Contribution to journal › Article

Nurses

Hospital Administrators

Surveys and Questionnaires

Safety

Population

A method to deliver patterned electrical impulses to Schwann cells cultured on an artificial axon

Merolli, A., Mao, Y., Voronin, G., Steele, J., Murthy, N. & Kohn, J., Jun 1 2019, In : Neural Regeneration Research. 14, 6, p. 1052-1059 8 p.

Research output: Contribution to journal › Article

Open Access

Schwann Cells

Axons

Peripheral Nerves

Neurons

Technology

2 Citations (Scopus)

A microfluidic 3D hepatocyte chip for hepatotoxicity testing of nanoparticles

Li, L., Gokduman, K., Gokaltun, A., Yarmush, M. & Usta, O. B., Aug 1 2019, In : Nanomedicine. 14, 16, p. 2209-2226 18 p.

Research output: Contribution to journal › Article

Microfluidics

Nanoparticles

Hepatocytes

Iron oxides

Testing

A microfluidic patterned model of non-alcoholic fatty liver disease: Applications to disease progression and zonation

Bulutoglu, B., Rey-Bedón, C., Kang, Y. B., Mert, S., Yarmush, M. & Usta, O. B., Jan 1 2019, In : Lab on a Chip. 19, 18, p. 3022-3031 10 p.

Research output: Contribution to journal › Article

Microfluidics

Liver

Disease Progression

Fatty acids

Lipids

25 Citations (Scopus)

A microfoundations approach to studying innovation in multinational subsidiaries

Nuruzzaman, N., Gaur, A. S. & Sambharya, R. B., Feb 1 2019, In : Global Strategy Journal. 9, 1, p. 92-116 25 p.

Research output: Contribution to journal › Article

Subsidiaries

Multinational subsidiary

Microfoundations

Innovation

Multinational enterprises

A microphysiological model of the bronchial airways reveals the interplay of mechanical and biochemical signals in bronchospasm

Kilic, O., Yoon, A., Shah, S. R., Yong, H. M., Ruiz-Valls, A., Chang, H., Panettieri, R., Liggett, S. B., Quiñones-Hinojosa, A., An, S. S. & Levchenko, A., Jul 1 2019, In : Nature biomedical engineering. 3, 7, p. 532-544 13 p.

Research output: Contribution to journal › Article

Bronchial Spasm

Asthma

Smooth Muscle

Epithelial Cells

Molecular Models

A milled microdevice to advance glia-mediated therapies in the adult nervous system

Peña, J. S., Robles, D., Zhang, S. & Vazquez, M., Aug 1 2019, In : Micromachines. 10, 8, 513.

Research output: Contribution to journal › Article

Open Access

Neurology

Neuroglia

Adhesion

Physiology

Photolithography

1 Citation (Scopus)

A mixed-methods study of women’s sanitation utilization in informal settlements in Kenya

Winter, S. C., Dreibelbis, R., Dzombo, M. N. & Barchi, F., Mar 2019, In : PloS one. 14, 3, e0214114.

Research output: Contribution to journal › Article

Open Access

Sanitation

Kenya

sanitation

methodology

Pathogens

Amniotic Band Syndrome: A Multidisciplinary Care Approach to the Treatment of a Rare Case

Mukherjee, P., Natera, M., Drew, H. & Creanga, A., Jan 1 2019, In : Cleft Palate-Craniofacial Journal. 56, 1, p. 105-109 5 p.

Research output: Contribution to journal › Article

Amniotic Band Syndrome

Tooth

Impacted Tooth

Syndactyly

Cone-Beam Computed Tomography

A model predictive control based iterative trajectory optimization method for systems with state-like disturbances

Edmonds, M. & Yi, J., Jul 2019, 2019 American Control Conference, ACC 2019. Institute of Electrical and Electronics Engineers Inc., p. 1635-1640 6 p. 8814598. (Proceedings of the American Control Conference; vol. 2019-July).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Model predictive control

Trajectories

Fluids

Iterative methods

Landing

A Molecular Assay Allows the Simultaneous Detection of 12 Fungi Causing Fruit Rot in Cranberry

Conti, M., Cinget, B., Vivancos, J., Oudemans, P. & Bélanger, R. R., Nov 1 2019, In : Plant disease. 103, 11, p. 2843-2850 8 p.

Research output: Contribution to journal › Article

cranberries

fungi

fruits

assays

Phacidiaceae

2 Citations (Scopus)

A molecular reconstruction approach to site-based 3D-RISM and comparison to GIST hydration thermodynamic maps in an enzyme active site

Nguyen, C., Yamazaki, T., Kovalenko, A., Case, D. A., Gilson, M. K., Kurtzman, T. & Luchko, T., Jan 1 2019, In : PloS one. 14, 7, e0219473.

Research output: Contribution to journal › Article

Open Access

Solvation

Thermodynamics

active sites

thermodynamics

Hydration

4 Citations (Scopus)

A Monte Carlo model with equipotential approximation and tunneling resistance for the electrical conductivity of carbon nanotube polymer composites

Fang, C., Zhang, J., Chen, X. & Weng, G. J., May 2019, In : Carbon. 146, p. 125-138 14 p.

Research output: Contribution to journal › Article

Carbon Nanotubes

Carbon nanotubes

Polymers

Composite materials

Fillers

2 Citations (Scopus)

A more robust gut microbiota in calorie-restricted mice is associated with attenuated intestinal injury caused by the chemotherapy drug cyclophosphamide

Liu, T., Wu, Y., Wang, L., Pang, X., Zhao, L., Yuan, H. & Zhang, C., Mar 1 2019, In : mBio. 10, 2, e02903-18.

Research output: Contribution to journal › Article

Open Access

Cyclophosphamide

Drug Therapy

Wounds and Injuries

Mucositis

Pharmaceutical Preparations

Amplifying mTORC2 signals through AMPK during energetic stress

Jacinto, E., Jun 11 2019, In : Science signaling. 12, 585, eaax5855.

Research output: Contribution to journal › Article

AMP-Activated Protein Kinases

Metabolism

Cell Survival

Intercellular Signaling Peptides and Proteins

Cells

4 Citations (Scopus)

A multi-model approach to understanding the role of Pacific sardine in the California Current food web

Kaplan, I. C., Francis, T. B., Punt, A. E., Koehn, L. E., Curchitser, E., Hurtado-Ferro, F., Johnson, K. F., Lluch-Cota, S. E., Sydeman, W. J., Essington, T. E., Taylor, N., Holsman, K., MacCall, A. D. & Levin, P. S., Jan 1 2019, In : Marine Ecology Progress Series. 617-618, p. 307-321 15 p.

Research output: Contribution to journal › Article

Open Access

Sardinops sagax

food webs

food web

sardines

ecosystems

4 Citations (Scopus)

Amyloid Plaques of Alzheimer’s Disease as Hotspots of Glutamatergic Activity

Ovsepian, S. V., O’Leary, V. B., Zaborszky, L., Ntziachristos, V. & Dolly, J. O., Aug 1 2019, In : Neuroscientist. 25, 4, p. 288-297 10 p.

Research output: Contribution to journal › Article

Amyloid Plaques

Alzheimer Disease

Glutamic Acid

Synaptic Vesicles

Memory Disorders

An adaptive thresholding-based process variability monitoring

Abdella, G. M., Kim, J., Kim, S., Al-Khalifa, K. N., Jeong, M-K., Hamouda, A. M. & Elsayed, E., Jul 3 2019, In : Journal of Quality Technology. 51, 3, p. 242-256 15 p.

Research output: Contribution to journal › Article

Process monitoring

Covariance matrix

Monitoring

Tuning

Semiconductor materials

An age control transport protocol for delivering fresh updates in the internet-of-things

Shreedhar, T., Kaul, S. K. & Yates, R. D., Jun 2019, 20th IEEE International Symposium on A World of Wireless, Mobile and Multimedia Networks, WoWMoM 2019. Institute of Electrical and Electronics Engineers Inc., 8793011. (20th IEEE International Symposium on A World of Wireless, Mobile and Multimedia Networks, WoWMoM 2019).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Network protocols

Internet

Internet of things

Monitoring

Experiments

An algebraic formulation of the locality principle in renormalisation

Clavier, P., Guo, L., Paycha, S. & Zhang, B., Jun 15 2019, In : European Journal of Mathematics. 5, 2, p. 356-394 39 p.

Research output: Contribution to journal › Article

Locality

Renormalization

Formulation

Factorization

Cone

An algebraic study of multivariable integration and linear substitution

Rosenkranz, M., Gao, X. & Guo, L., Nov 1 2019, In : Journal of Algebra and its Applications. 18, 11, 1950207.

Research output: Contribution to journal › Article

Substitution

Substitution reactions

Operator

Bialgebra

Algebraic Theory

1 Citation (Scopus)

An algorithmic separating hyperplane theorem and its applications

Kalantari, B., Mar 15 2019, In : Discrete Applied Mathematics. 256, p. 59-82 24 p.

Research output: Contribution to journal › Article

Hyperplane

Iteration

Triangle

Theorem

Pivot

16 Citations (Scopus)

An alternative mitophagy pathway mediated by Rab9 protects the heart against ischemia

Saito, T., Nah, J., Oka, S. I., Mukai, R., Monden, Y., Maejima, Y., Ikeda, Y., Sciarretta, S., Liu, T., Li, H., Baljinnyam, E., Fraidenraich, D., Fritzky, L., Zhai, P., Ichinose, S., Isobe, M., Hsu, C. P., Kundu, M. & Sadoshima, J., Feb 1 2019, In : Journal of Clinical Investigation. 129, 2, p. 802-819 18 p.

Research output: Contribution to journal › Article

Mitochondrial Degradation

Autophagy

Ischemia

Mitochondria

Dynamins

Analysing the policy space for the promotion of healthy, sustainable edible oil consumption in India

Cuevas, S., Downs, S., Ghosh-Jerath, S., Aafrin & Shankar, B., Jan 1 2019, (Accepted/In press) In : Public Health Nutrition.

Research output: Contribution to journal › Article

promotion

India

oils

nutrition

oil