Find Research Outputs

2019

D3R Grand Challenge 3: blind prediction of protein–ligand poses and affinity rankings

Gaieb, Z., Parks, C. D., Chiu, M., Yang, H., Shao, C., Walters, W. P., Lambert, M. H., Nevins, N., Bembenek, S. D., Ameriks, M. K., Mirzadegan, T., Burley, S., Amaro, R. E. & Gilson, M. K., Jan 15 2019, In : Journal of Computer-Aided Molecular Design. 33, 1

Research output: Contribution to journalArticle

cathepsin S
Teaching Rounds
ranking
Drug Design
Protein S

D-Allulose is a substrate of glucose transporter type 5 (GLUT5) in the small intestine

Kishida, K., Martinez, G., Iida, T., Yamada, T., Ferraris, R. & Toyoda, Y., Mar 30 2019, In : Food Chemistry. 277, p. 604-608 5 p.

Research output: Contribution to journalArticle

Glucose Transporter Type 5
psicose
glucose transporters
Small Intestine
small intestine
Inbred WKY Rats
Anxiety
Learning
Safety
Sprague Dawley Rats
1 Citation (Scopus)

Data-Driven Robust Taxi Dispatch under Demand Uncertainties

Miao, F., Han, S., Lin, S., Wang, Q., Stankovic, J. A., Hendawi, A., Zhang, D., He, T. & Pappas, G. J., Jan 1 2019, In : IEEE Transactions on Control Systems Technology. 27, 1, p. 175-191 17 p., 8105899.

Research output: Contribution to journalArticle

Sensors
Testing
Uncertainty
High-Throughput Nucleotide Sequencing
Peptide Hydrolases
Learning
Hepacivirus
Yeasts

Decadal-scale variability of sardine and anchovy simulated with an end-to-end coupled model of the Canary Current ecosystem

Sánchez-Garrido, J. C., Werner, F. E., Fiechter, J., Rose, K. A., Curchitser, E., Ramos, A., García Lafuente, J., Arístegui, J., Hernández-León, S. & Rodríguez Santana, A., Feb 1 2019, In : Progress in Oceanography. 171, p. 212-230 19 p.

Research output: Contribution to journalArticle

canaries
anchovies
sardines
upwelling
ecosystems

Decarbonylative Borylation of Amides by Palladium Catalysis

Shi, S. & Szostak, M., Mar 5 2019, In : ACS Omega. 4, 3, p. 4901-4907 7 p.

Research output: Contribution to journalArticle

Palladium
Amides
Catalysis
Ground state
Functional groups

Decentralized temporal independent component analysis: Leveraging fMRI data in collaborative settings

Baker, B. T., Abrol, A., Silva, R. F., Damaraju, E., Sarwate, A., Calhoun, V. D. & Plis, S. M., Feb 1 2019, In : NeuroImage. 186, p. 557-569 13 p.

Research output: Contribution to journalArticle

Joints
Privacy
Magnetic Resonance Imaging
Research
Activation Analysis

Decoding epigenetic cell signaling in neuronal differentiation

Vieira, M. S., Goulart, V. A. M., Parreira, R. C., Oliveira-Lima, O. C., Glaser, T., Naaldijk, Y. M., Ferrer, A., Savanur, V. H., Reyes, P. A., Sandiford, O., Rameshwar, P., Ulrich, H., Pinto, M. C. X. & Resende, R. R., Jan 1 2019, (Accepted/In press) In : Seminars in Cell and Developmental Biology.

Research output: Contribution to journalArticle

Epigenomics
Neurons
Untranslated RNA
Neural Stem Cells
Transcription Factors

Deformations and Their Controlling Cohomologies of O -Operators

Tang, R., Bai, C., Guo, L. & Sheng, Y., Jan 1 2019, In : Communications In Mathematical Physics.

Research output: Contribution to journalArticle

homology
Cohomology
operators
Operator
algebra

Delayed-Onset Cyst Formation After Laser Interstitial Thermal Therapy: Unreported Long-Term Complication

Carminucci, A., Parr, M., Bitar, M. & Danish, S., Apr 1 2019, In : World Neurosurgery. 124, p. 219-223 5 p.

Research output: Contribution to journalArticle

Gliosis
Sclerosis
Blood Vessels
Cysts
Lasers

Dementia Family Caregivers’ Willingness to Pay for an In-home Program to Reduce Behavioral Symptoms and Caregiver Stress

Jutkowitz, E., Scerpella, D., Pizzi, L., Marx, K., Samus, Q., Piersol, C. V. & Gitlin, L. N., Jan 1 2019, In : PharmacoEconomics.

Research output: Contribution to journalArticle

Behavioral Symptoms
Caregivers
Dementia
Confidence Intervals
Switzerland

Democracy's deficit: The role of institutional contact in shaping non-white political behavior

Garciá-Castanõn, M., Huckle, K., Walker, H. & Chong, C., Mar 1 2019, In : Journal of Race, Ethnicity and Politics. 4, 1, p. 1-31 31 p.

Research output: Contribution to journalArticle

Open Access
political behavior
deficit
contact
democracy
mobilization

Demonstration of 50-mV Digital Integrated Circuits with Microelectromechanical Relays

Ye, Z. A., Almeida, S., Rusch, M., Perlas, A., Zhang, W., Sikder, U., Jeon, J., Stojanovic, V. & Liu, T. J. K., Jan 16 2019, 2018 IEEE International Electron Devices Meeting, IEDM 2018. Institute of Electrical and Electronics Engineers Inc., p. 4.1.1-4.1.4 8614663. (Technical Digest - International Electron Devices Meeting, IEDM; vol. 2018-December).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Digital integrated circuits
relay
integrated circuits
Electric power utilization
Demonstrations

Derived models of mice below the least fixpoint of the solovay sequence

Adolf, D. & Sargsyan, G., Mar 1 2019, In : Journal of Symbolic Logic. 84, 1, p. 27-53 27 p.

Research output: Contribution to journalArticle

Fixpoint
Mouse
Large Cardinals
Logic
Model
1 Citation (Scopus)

Deriving Efficient Porous Heteroatom-Doped Carbon Electrocatalysts for Hydrazine Oxidation from Transition Metal Ions-Coordinated Casein

Fragal, V. H., Fragal, E. H., Zhang, T., Huang, X., Cellet, T. S. P., Pereira, G. M., Jitianu, A., Rubira, A. F., Silva, R. & Asefa, T., Jan 1 2019, (Accepted/In press) In : Advanced Functional Materials. 1808486.

Research output: Contribution to journalArticle

hydrazine
Casein
electrocatalysts
Electrocatalysts
Hydrazine

Designing soft pyroelectric and electrocaloric materials using electrets

Darbaniyan, F., Dayal, K., Liu, L. & Sharma, P., Jan 1 2019, In : Soft Matter. 15, 2, p. 262-277 16 p.

Research output: Contribution to journalArticle

Electrets
electrets
Pyroelectricity
pyroelectricity
Energy harvesting
1 Citation (Scopus)

Design of functionalized folic acid–chitosan nanoparticles for delivery of tetracycline, doxorubicin, and tamoxifen

Chanphai, P., Thomas, T. & Tajmir-Riahi, H. A., Mar 4 2019, In : Journal of Biomolecular Structure and Dynamics. 37, 4, p. 1000-1006 7 p.

Research output: Contribution to journalLetter

Chitosan
Tamoxifen
Tetracycline
Folic Acid
Nanoparticles

Detailed X-Ray Mapping of the Shocked Ejecta and Circumstellar Medium in the Galactic Core-collapse Supernova Remnant G292.0+1.8

Bhalerao, J., Park, S., Schenck, A., Post, S. & Hughes, J., Feb 10 2019, In : Astrophysical Journal. 872, 1, A31.

Research output: Contribution to journalArticle

supernova remnants
ejecta
pulsars
x rays
explosions

Detection of Multiway Gamma Coordination Reveals How Frequency Mixing Shapes Neural Dynamics

Haufler, D. & Pare, D., Feb 20 2019, In : Neuron. 101, 4, p. 603-614.e6

Research output: Contribution to journalArticle

Technology
Neurons

Deterioration and Predictive Condition Modeling of Concrete Bridge Decks Based on Data from Periodic NDE Surveys

Kim, J., Gucunski, N. & Dinh, K., Jun 1 2019, In : Journal of Infrastructure Systems. 25, 2, 04019010.

Research output: Contribution to journalArticle

Bridge decks
Concrete bridges
Deterioration
Service life
Data integration

Determinants of Intimate Partner Violence Among Young Men Who Have Sex With Men: The P18 Cohort Study

Stults, C. B., Javdani, S., Kapadia, F. & Halkitis, P., Jan 1 2019, In : Journal of Interpersonal Violence.

Research output: Contribution to journalArticle

Cohort Studies
Violence
Crime Victims
Depression
Intimate Partner Violence

Determination of immediate demand and decay of chlorine-produced oxidants (CPO) in Hudson River

Patoczka, J., Miskewitz, R. & Pocci, F. J., Jan 1 2019, 91st Annual Water Environment Federation Technical Exhibition and Conference, WEFTEC 2018. Water Environment Federation, p. 2167-2178 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Chlorine
Oxidants
oxidant
chlorine
Rivers
1 Citation (Scopus)
Pavement overlays
Life cycle
Patient rehabilitation
Costs
Pavements

Developing a profiling glider pH sensor for high resolution coastal ocean acidification monitoring

Saba, G., Wright-Fairbanks, E., Miles, T., Chen, B., Cai, W. J., Wang, K., Barnard, A. H., Branham, C. W. & Jones, C. P., Jan 7 2019, OCEANS 2018 MTS/IEEE Charleston, OCEAN 2018. Institute of Electrical and Electronics Engineers Inc., 8604918. (OCEANS 2018 MTS/IEEE Charleston, OCEAN 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gliders
pH sensors
Acidification
acidification
sensor

Developing organogel-based Pickering emulsions with improved freeze-thaw stability and hesperidin bioaccessibility

Wei, Z. & Huang, Q., Aug 1 2019, In : Food Hydrocolloids. 93, p. 68-77 10 p.

Research output: Contribution to journalArticle

Hesperidin
hesperidin
Emulsions
emulsions
Soybean oil

Developmental onset of cardiovascular disease—Could the proof be in the placenta?

D'Errico, J. N. & Stapleton, P., Jan 1 2019, (Accepted/In press) In : Microcirculation. e12526.

Research output: Contribution to journalArticle

Placenta
Mothers
Fetus
Fetal Development
Blood Vessels

Development and Validation of the Policies, Opportunities, Initiatives and Notable Topics (POINTS) Audit for Campuses and Worksites

Horacek, T. M., Simon, M., Dede Yildirim, E., White, A. A., Shelnutt, K. P., Riggsbee, K., Olfert, M. D., Morrell, J. S., Mathews, A. E., Zhou, W., Kidd, T., Kattelmann, K., Greene, G., Franzen-Castle, L., Colby, S., Byrd-Bredbenner, D. & Brown, O., Mar 4 2019, In : International journal of environmental research and public health. 16, 5

Research output: Contribution to journalArticle

Open Access
Policy Making
Workplace
Students
Health
Benchmarking

Development and Validation of the Vending Evaluation for Nutrient-Density (VEND)ing Audit

Horacek, T. M., Yildirim, E. D., Matthews Schreiber, M., Byrd-Bredbenner, D., Colby, S., White, A. A., Shelnutt, K. P., Olfert, M. D., Mathews, A. E., Riggsbee, K., Franzen-Castle, L., Morrell, J. S. & Kattelmann, K., Feb 12 2019, In : International journal of environmental research and public health. 16, 3

Research output: Contribution to journalArticle

Open Access
Snacks
Beverages
Food
Research Personnel
Sensitivity and Specificity
4 Citations (Scopus)
Pavements
Genetic algorithms
Neural networks
Testing
Pavement overlays

Development of a semi-mechanistic allergenic pollen emission model

Cai, T., Zhang, Y., Ren, X., Bielory, L., Mi, Z., Nolte, C. G., Gao, Y., Leung, L. R. & Georgopoulos, P., Feb 25 2019, In : Science of the Total Environment. 653, p. 947-957 11 p.

Research output: Contribution to journalArticle

pollen
Fluxes
Atmospheric humidity
flowering
resuspension

Dexpramipexole depletes blood and tissue eosinophils in nasal polyps with no change in polyp size

Laidlaw, T. M., Prussin, C., Panettieri, R., Lee, S., Ferguson, B. J., Adappa, N. D., Lane, A. P., Palumbo, M. L., Sullivan, M., Archibald, D., Dworetzky, S. I., Hebrank, G. T. & Bozik, M. E., Feb 1 2019, In : Laryngoscope. 129, 2, p. E61-E66

Research output: Contribution to journalArticle

Nasal Polyps
Polyps
Eosinophils
Eosinophilia
pramipexole

Diagnostic value of combined IQGAP3/BMP4 and IQGAP3/FAM107A expression ratios in urinary cell-free DNA for discriminating bladder cancer from hematuria

Xu, Y., Kim, Y. H., Jeong, P., Piao, X. M., Byun, Y. J., Kang, H. W., Kim, W. T., Lee, J. Y., Kim, I., Moon, S. K., Choi, Y. H., Yun, S. J. & Kim, W. J., Jan 1 2019, In : Urologic Oncology: Seminars and Original Investigations. 37, 1, p. 86-96 11 p.

Research output: Contribution to journalArticle

Hematuria
Urinary Bladder Neoplasms
DNA
Area Under Curve
Urologic Neoplasms

Dielectric permittivity-water content relationships in woodchips: Particle size and temperature effects

Amato, M. T., Subroy, V., Gimenez, D., Strom, P. & Krogmann, U., May 1 2019, In : Journal of Hydrology. 572, p. 251-260 10 p.

Research output: Contribution to journalArticle

permittivity
size effect
temperature effect
water content
particle size

Diel variation in mercury stable isotope ratios records photoreduction of PM2.5-bound mercury

Huang, Q., Chen, J., Huang, W., Reinfelder, J., Fu, P., Yuan, S., Wang, Z., Yuan, W., Cai, H., Ren, H., Sun, Y. & He, L., Jan 9 2019, In : Atmospheric Chemistry and Physics. 19, 1, p. 315-325 11 p.

Research output: Contribution to journalArticle

diel variation
stable isotope
isotopic composition
urban atmosphere
isotopic fractionation

Differential effects of androgens, estrogens and socio-sexual context on sexual behaviors in the castrated male goat

Fritz, W. F., Sena, L. S., Becker, S. E. & Katz, L., Mar 1 2019, In : Hormones and Behavior. 109, p. 10-17 8 p.

Research output: Contribution to journalArticle

Courtship
Goats
Sexual Behavior
Androgens
Estrogens

Differential effects of depot medroxyprogesterone acetate administration on vaginal microbiome in Hispanic White and Black women

Yang, L., Hao, Y., Hu, J., Kelly, D., Li, H., Brown, S., Tasker, C., Roche, N. E., Chang, L. Y. & Pei, Z., Jan 1 2019, In : Emerging microbes & infections. 8, 1, p. 197-210 14 p.

Research output: Contribution to journalArticle

Open Access
Intravaginal Administration
Medroxyprogesterone Acetate
Microbiota
Hispanic Americans
Bacteria

Differential modes of crosslinking establish spatially distinct regions of peptidoglycan in Caulobacter crescentus

Stankeviciute, G., Miguel, A. V., Radkov, A., Chou, S., Huang, K. C. & Klein, E., Jan 1 2019, In : Molecular Microbiology.

Research output: Contribution to journalArticle

Caulobacter crescentus
Peptidoglycan
Diaminopimelic Acid
Muramidase
Cell Shape

Direct in situ observation of electric field assisted densification of ZnO by energy dispersive X-ray diffraction

Bicer, H., Beyoglu, B., Ozdemir, T. E., Okasinski, J. & Tsakalakos, T., Apr 15 2019, In : Ceramics International. 45, 6, p. 7614-7618 5 p.

Research output: Contribution to journalArticle

Densification
Electric fields
X ray diffraction
Spark plasma sintering
Zinc Oxide
2 Citations (Scopus)
Phosphatidate Phosphatase
Yeast
Genes
Yeasts
Lipids

Discovering urban travel demands through dynamic zone correlation in location-based social networks

Hu, W., Yao, Z., Yang, S., Chen, S. & Jin, J., Jan 1 2019, Machine Learning and Knowledge Discovery in Databases - European Conference, ECML PKDD 2018, Proceedings. Bonchi, F., Berlingerio, M., Gärtner, T., Hurley, N. & Ifrim, G. (eds.). Springer Verlag, p. 88-104 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11052 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Social Networks
Product-moment correlation
Joint Model
Prediction
Correlation Analysis

Discovery, properties, and biosynthesis of pseudouridimycin, an antibacterial nucleoside-analog inhibitor of bacterial RNA polymerase

Maffioli, S. I., Sosio, M., Ebright, R. & Donadio, S., Mar 29 2019, In : Journal of Industrial Microbiology and Biotechnology. 46, 3-4, p. 335-343 9 p.

Research output: Contribution to journalReview article

Bacterial RNA
Biosynthesis
DNA-Directed RNA Polymerases
RNA
Nucleosides

Disparities in impact of nasopharyngeal cancer: An analysis of global health burden

Ramsey, T., Hojjat, H., Yuhan, B., Svider, P. F., Eloy, J., Folbe, A. J., Raza, S. N. & Fribley, A. M., Jan 1 2019, In : Laryngoscope.

Research output: Contribution to journalArticle

Nasopharyngeal Neoplasms
Human Development
Laryngoscopes
Nasopharyngeal carcinoma
Global Health

Dissimilatory iron and sulfate reduction by native microbial communities using lactate and citrate as carbon sources and electron donors

Xia, D., Yi, X., Lu, Y., Huang, W., Xie, Y., Ye, H., Dang, Z., Tao, X., Li, L. & Lu, G., Jun 15 2019, In : Ecotoxicology and Environmental Safety. 174, p. 524-531 8 p.

Research output: Contribution to journalArticle

Citric Acid
Fermentation
Sulfates
Lactic Acid
Carbon

Dissipation of Emergent Traffic Waves in Stop-and-Go Traffic Using a Supervisory Controller

Bhadani, R. K., Piccoli, B., Seibold, B., Sprinkle, J. & Work, D., Jan 18 2019, 2018 IEEE Conference on Decision and Control, CDC 2018. Institute of Electrical and Electronics Engineers Inc., p. 3628-3633 6 p. 8619700. (Proceedings of the IEEE Conference on Decision and Control; vol. 2018-December).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dissipation
Traffic
Controller
Controllers
Parameter Design
1 Citation (Scopus)

Dissolution Testing in Drug Product Development: Workshop Summary Report

Abend, A., Curran, D., Kuiper, J., Lu, X., Li, H., Hermans, A., Kotwal, P., Diaz, D. A., Cohen, M. J., Zhang, L., Stippler, E., Drazer, G., Lin, Y., Raines, K., Yu, L., Coutant, C. A., Grady, H., Krämer, J., Pope-Miksinski, S. & Suarez-Sharp, S., Mar 1 2019, In : AAPS Journal. 21, 2, 21.

Research output: Contribution to journalArticle

Education
Pharmaceutical Preparations
Life Cycle Stages
Terminology
Quality Control

Divergence in Alewife Alosa pseudoharengus (Actinopterygii, Clupeidae), life history alters parasite communities

Grunberg, R. L., Brianik, C. J., Lovy, J. & Sukhdeo, M., Jan 1 2019, In : Hydrobiologia. 826, 1, p. 307-318 12 p.

Research output: Contribution to journalArticle

Clupeidae
Alosa pseudoharengus
Actinopterygii
parasite
life history

Divergence in recent trends in deaths from intentional and unintentional poisoning

Hempstead, K. & Phillips, J., Jan 1 2019, In : Health Affairs. 38, 1, p. 29-35 7 p.

Research output: Contribution to journalArticle

Poisoning
Suicide
Opioid Analgesics
Heroin
Fentanyl

D-MIMOO - Distributed MIMO for Office Wi-Fi Networks

Krishnan, N. N., Torkildson, E., Rantala, E., Seskar, I., Mandayam, N. & Doppler, K., Jan 11 2019, 2018 IEEE International Symposium on Dynamic Spectrum Access Networks, DySPAN 2018. Institute of Electrical and Electronics Engineers Inc., 8610495. (2018 IEEE International Symposium on Dynamic Spectrum Access Networks, DySPAN 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Wi-Fi
MIMO systems
Throughput
Topology
Antennas
2 Citations (Scopus)

DNA methylation GrimAge strongly predicts lifespan and healthspan

Lu, A. T., Quach, A., Wilson, J. G., Reiner, A. P., Aviv, A., Raj, K., Hou, L., Baccarelli, A. A., Li, Y., Stewart, J. D., Whitsel, E. A., Assimes, T. L., Ferrucci, L. & Horvath, S., Jan 1 2019, In : Aging. 11, 2, p. 303-327 25 p.

Research output: Contribution to journalArticle

DNA Methylation
Epigenomics
Biomarkers
Plasminogen Activator Inhibitor 1
Comorbidity