Find Research Outputs

2019
1 Citation (Scopus)

A ligand motif enables differential vascular targeting of endothelial junctions between brain and retina

Tang, F. H. F., Staquicini, F. I., Teixeira, A. A. R., Michaloski, J. S., Namiyama, G. M., Taniwaki, N. N., Setubal, J. C., Da Silva, A. M., Sidman, R. L., Pasqualini, R., Arap, W. & Giordano, R. J., Feb 5 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 6, p. 2300-2305 6 p.

Research output: Contribution to journalArticle

Blood Vessels
Retina
Ligands
Peptides
Brain

A lipid site shapes the agonist response of a pentameric ligand-gated ion channel

Hénault, C. M., Govaerts, C., Spurny, R., Brams, M., Estrada-Mondragon, A., Lynch, J., Bertrand, D., Pardon, E., Evans, G. L., Woods, K., Elberson, B. W., Cuello, L. G., Brannigan, G., Nury, H., Steyaert, J., Baenziger, J. E. & Ulens, C., Dec 1 2019, In : Nature Chemical Biology. 15, 12, p. 1156-1164 9 p.

Research output: Contribution to journalArticle

Ligand-Gated Ion Channels
Erwinia
Lipids
Phospholipids
Glycine Receptors
1 Citation (Scopus)

Allele-specific expression and high-throughput reporter assay reveal functional genetic variants associated with alcohol use disorders

Rao, X., Thapa, K. S., Chen, A. B., Lin, H., Gao, H., Reiter, J. L., Hargreaves, K. A., Ipe, J., Lai, D., Xuei, X., Wang, Y., Gu, H., Kapoor, M., Farris, S. P., Tischfield, J., Foroud, T., Goate, A. M., Skaar, T. C., Mayfield, R. D., Edenberg, H. J. & 1 others, Liu, Y., Jan 1 2019, (Accepted/In press) In : Molecular psychiatry.

Research output: Contribution to journalArticle

Open Access
Alleles
Single Nucleotide Polymorphism
Alcohols
Genome-Wide Association Study
3' Untranslated Regions
1 Citation (Scopus)

Alleviating poverty or discontent: The impact of social assistance on Chinese citizens’ views of government

Huang, X. & Gao, Q., Feb 2019, In : China: An International Journal. 17, 1, p. 76-95 20 p.

Research output: Contribution to journalArticle

social assistance
poverty
citizen
China
political impact
2 Citations (Scopus)

Alleviating urban heat island effect using high-conductivity permeable concrete pavement

Chen, J., Chu, R., Wang, H., Zhang, L., Chen, X. & Du, Y., Nov 10 2019, In : Journal of Cleaner Production. 237, 117722.

Research output: Contribution to journalArticle

Concrete pavements
heat island
pavement
Thermal effects
conductivity
Open Access
Physiological Adaptation
Glucocorticoids
Allostasis
Circadian Clocks
Periodicity
1 Citation (Scopus)
reconstruction
video
Trajectories
traffic
model analysis
1 Citation (Scopus)

Alpha-1 Antitrypsin Deficiency Liver Disease, Mutational Homogeneity Modulated by Epigenetic Heterogeneity With Links to Obesity

Wang, L., Marek, G. W., Hlady, R. A., Wagner, R. T., Zhao, X., Clark, V. C., Fan, A. X., Liu, C., Brantly, M. & Robertson, K. D., Jul 2019, In : Hepatology. 70, 1, p. 51-66 16 p.

Research output: Contribution to journalArticle

alpha 1-Antitrypsin Deficiency
Deficiency Diseases
Epigenomics
5-Methylcytosine
Liver Diseases

Alpha-band desynchronization reflects memory-specific processes during visual change detection

Erickson, M. A., Smith, D., Albrecht, M. A. & Silverstein, S., Nov 1 2019, In : Psychophysiology. 56, 11, e13442.

Research output: Contribution to journalArticle

Short-Term Memory
Electroencephalography
Color
Healthy Volunteers
Electrodes

Alpha-carboxynucleoside phosphonates: Direct-acting inhibitors of viral DNA polymerases

Balzarini, J., Ford, A., Maguire, N. M., John, J., Das, K., Arnold, E., Dehaen, W. & Maguire, A., Jan 2019, In : Future Medicinal Chemistry. 11, 2, p. 137-154 18 p.

Research output: Contribution to journalReview article

Nucleic Acid Synthesis Inhibitors
Organophosphonates
Viral DNA
DNA-Directed DNA Polymerase
Nucleosides
1 Citation (Scopus)
Biota
Superfund
Polychlorinated Biphenyls
Dermatoglyphics
Ports and harbors
2 Citations (Scopus)
Thalamus
Hippocampus
Magnetic Resonance Imaging
Percussion
Diffusion Tensor Imaging

Alterations to the esophageal microbiome associated with progression from Barrett's esophagus to esophageal adenocarcinoma

Snider, E. J., Compres, G., Freedberg, D. E., Khiabanian, H., Nobel, Y. R., Stump, S., Uhlemann, A. C., Lightdale, C. J. & Abrams, J. A., Jan 1 2019, In : Cancer Epidemiology Biomarkers and Prevention. 28, 10, p. 1687-1693 7 p.

Research output: Contribution to journalArticle

Barrett Esophagus
Microbiota
Adenocarcinoma
Endoscopy
Veillonella
1 Citation (Scopus)

ALYREF links 3′-end processing to nuclear export of non-polyadenylated mRNAs

Fan, J., Wang, K., Du, X., Wang, J., Chen, S., Wang, Y., Shi, M., Zhang, L., Wu, X., Zheng, D., Wang, C., Wang, L., Tian, B., Li, G., Zhou, Y. & Cheng, H., May 2 2019, In : EMBO Journal. 38, 9, e99910.

Research output: Contribution to journalArticle

Cell Nucleus Active Transport
Histones
U7 Small Nuclear Ribonucleoproteins
Messenger RNA
Processing

A Markov Model for Non-lognormal Density Distributions in Compressive Isothermal Turbulence

Mocz, P. & Burkhart, B., Oct 20 2019, In : Astrophysical Journal Letters. 884, 2, L35.

Research output: Contribution to journalArticle

density distribution
turbulence
probability distribution functions
Mach number
star formation
2 Citations (Scopus)

Ambient-Pressure X-ray Photoelectron Spectroscopy Characterization of Radiation-Induced Chemistries of Organotin Clusters

Diulus, J. T., Frederick, R. T., Li, M., Hutchison, D. C., Olsen, M. R., Lyubinetsky, I., Árnadóttir, L., Garfunkel, E., Nyman, M., Ogasawara, H. & Herman, G. S., Jan 16 2019, In : ACS Applied Materials and Interfaces. 11, 2, p. 2526-2534 9 p.

Research output: Contribution to journalArticle

X ray photoelectron spectroscopy
Radiation
Photoresists
Photolithography
Partial pressure
1 Citation (Scopus)

A Mechanical Intermittent Abdominal Pressure Ventilator

Bach, J. R., Radbourne, M., Potpally, N. & Chiou, M., Dec 1 2019, In : American journal of physical medicine & rehabilitation. 98, 12, p. e144-e146

Research output: Contribution to journalArticle

Mechanical Ventilators
Pressure
Oxyhemoglobins
Tracheostomy
Tidal Volume

A mechanosensitive channel governs lipid flippase-mediated echinocandin resistance in cryptococcus neoformans

Cao, C., Wang, Y., Husain, S., Soteropoulos, P. & Xue, C., Nov 1 2019, In : mBio. 10, 6, e01952-19.

Research output: Contribution to journalArticle

Open Access
caspofungin
Echinocandins
Cryptococcus neoformans
Lipids
Cryptococcosis

A metamodeling framework for quantifying health damages of power grid expansion plans

Rodgers, M. D., Coit, D. W., Felder, F. A. & Carlton, A. G., May 2 2019, In : International journal of environmental research and public health. 16, 10, 1857.

Research output: Contribution to journalArticle

Open Access
Health
Electricity
Costs and Cost Analysis
United States Environmental Protection Agency
Administrative Personnel

A Method of Aggregating Environmental DNA for

Valentin, R., Lockwood, J. & Fonseca, D., Jan 2019

Research output: Innovation

DNA
Halyomorpha halys
methodology
invasive species
monitoring
1 Citation (Scopus)

A Methodology for Studying Organizational Performance: A Multistate Survey of Front-line Providers

Lasater, K. B., Jarrin, O., Aiken, L. H., McHugh, M. D., Sloane, D. M. & Smith, H. L., Sep 1 2019, In : Medical Care. 57, 9, p. 742-749 8 p.

Research output: Contribution to journalArticle

Nurses
Hospital Administrators
Surveys and Questionnaires
Safety
Population

A method to deliver patterned electrical impulses to Schwann cells cultured on an artificial axon

Merolli, A., Mao, Y., Voronin, G., Steele, J., Murthy, N. & Kohn, J., Jun 1 2019, In : Neural Regeneration Research. 14, 6, p. 1052-1059 8 p.

Research output: Contribution to journalArticle

Open Access
Schwann Cells
Axons
Peripheral Nerves
Neurons
Technology
2 Citations (Scopus)

A microfluidic 3D hepatocyte chip for hepatotoxicity testing of nanoparticles

Li, L., Gokduman, K., Gokaltun, A., Yarmush, M. & Usta, O. B., Aug 1 2019, In : Nanomedicine. 14, 16, p. 2209-2226 18 p.

Research output: Contribution to journalArticle

Microfluidics
Nanoparticles
Hepatocytes
Iron oxides
Testing
1 Citation (Scopus)

A microfluidic patterned model of non-alcoholic fatty liver disease: Applications to disease progression and zonation

Bulutoglu, B., Rey-Bedón, C., Kang, Y. B., Mert, S., Yarmush, M. & Usta, O. B., Jan 1 2019, In : Lab on a Chip. 19, 18, p. 3022-3031 10 p.

Research output: Contribution to journalArticle

Microfluidics
Liver
Disease Progression
Fatty acids
Lipids
25 Citations (Scopus)

A microfoundations approach to studying innovation in multinational subsidiaries

Nuruzzaman, N., Gaur, A. S. & Sambharya, R. B., Feb 1 2019, In : Global Strategy Journal. 9, 1, p. 92-116 25 p.

Research output: Contribution to journalArticle

Subsidiaries
Multinational subsidiary
Microfoundations
Innovation
Multinational enterprises
1 Citation (Scopus)

A microphysiological model of the bronchial airways reveals the interplay of mechanical and biochemical signals in bronchospasm

Kilic, O., Yoon, A., Shah, S. R., Yong, H. M., Ruiz-Valls, A., Chang, H., Panettieri, R. A., Liggett, S. B., Quiñones-Hinojosa, A., An, S. S. & Levchenko, A., Jul 1 2019, In : Nature biomedical engineering. 3, 7, p. 532-544 13 p.

Research output: Contribution to journalArticle

Bronchial Spasm
Asthma
Smooth Muscle
Epithelial Cells
Molecular Models
1 Citation (Scopus)

A milled microdevice to advance glia-mediated therapies in the adult nervous system

Peña, J. S., Robles, D., Zhang, S. & Vazquez, M., Aug 1 2019, In : Micromachines. 10, 8, 513.

Research output: Contribution to journalArticle

Open Access
Neurology
Neuroglia
Adhesion
Physiology
Photolithography
1 Citation (Scopus)

A mixed-methods study of women’s sanitation utilization in informal settlements in Kenya

Winter, S. C., Dreibelbis, R., Dzombo, M. N. & Barchi, F., Mar 2019, In : PloS one. 14, 3, e0214114.

Research output: Contribution to journalArticle

Open Access
Sanitation
Kenya
sanitation
methodology
Pathogens

A mixture of citrus polymethoxyflavones, green tea polyphenols and lychee extracts attenuates adipogenesis in 3T3-L1 adipocytes and obesity-induced adipose inflammation in mice

Pan, M. H., Li, M. Y., Tsai, M. L., Pan, C. Y., Badmaev, V., Ho, C. T. & Lai, C. S., Dec 2019, In : Food and Function. 10, 12, p. 7667-7677 11 p.

Research output: Contribution to journalArticle

Litchi
Adipogenesis
Citrus
Polyphenols
green tea

Amniotic Band Syndrome: A Multidisciplinary Care Approach to the Treatment of a Rare Case

Mukherjee, P. M., Natera, M., Drew, H. & Creanga, A., Jan 1 2019, In : Cleft Palate-Craniofacial Journal. 56, 1, p. 105-109 5 p.

Research output: Contribution to journalArticle

Amniotic Band Syndrome
Tooth
Impacted Tooth
Syndactyly
Cone-Beam Computed Tomography

A model predictive control based iterative trajectory optimization method for systems with state-like disturbances

Edmonds, M. & Yi, J., Jul 2019, 2019 American Control Conference, ACC 2019. Institute of Electrical and Electronics Engineers Inc., p. 1635-1640 6 p. 8814598. (Proceedings of the American Control Conference; vol. 2019-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Model predictive control
Trajectories
Fluids
Iterative methods
Landing

A molecular assay allows the simultaneous detection of 12 fungi causing fruit rot in cranberry

Conti, M., Cinget, B., Vivancos, J., Oudemans, P. & Bélanger, R. R., Jan 1 2019, In : Plant disease. 103, 11, p. 2843-2850 8 p.

Research output: Contribution to journalArticle

cranberries
fungi
fruits
assays
Phacidiaceae
2 Citations (Scopus)

A molecular reconstruction approach to site-based 3D-RISM and comparison to GIST hydration thermodynamic maps in an enzyme active site

Nguyen, C., Yamazaki, T., Kovalenko, A., Case, D. A., Gilson, M. K., Kurtzman, T. & Luchko, T., Jan 1 2019, In : PloS one. 14, 7, e0219473.

Research output: Contribution to journalArticle

Open Access
Solvation
Thermodynamics
active sites
thermodynamics
Hydration
6 Citations (Scopus)

A Monte Carlo model with equipotential approximation and tunneling resistance for the electrical conductivity of carbon nanotube polymer composites

Fang, C., Zhang, J., Chen, X. & Weng, G. J., May 2019, In : Carbon. 146, p. 125-138 14 p.

Research output: Contribution to journalArticle

Carbon Nanotubes
Carbon nanotubes
Polymers
Composite materials
Fillers
2 Citations (Scopus)

A more robust gut microbiota in calorie-restricted mice is associated with attenuated intestinal injury caused by the chemotherapy drug cyclophosphamide

Liu, T., Wu, Y., Wang, L., Pang, X., Zhao, L., Yuan, H. & Zhang, C., Mar 1 2019, In : mBio. 10, 2, e02903-18.

Research output: Contribution to journalArticle

Open Access
Cyclophosphamide
Drug Therapy
Wounds and Injuries
Mucositis
Pharmaceutical Preparations

Amplifying mTORC2 signals through AMPK during energetic stress

Jacinto, E., Jun 11 2019, In : Science signaling. 12, 585, eaax5855.

Research output: Contribution to journalArticle

AMP-Activated Protein Kinases
Metabolism
Cell Survival
Intercellular Signaling Peptides and Proteins
Cells
4 Citations (Scopus)

A multi-model approach to understanding the role of Pacific sardine in the California Current food web

Kaplan, I. C., Francis, T. B., Punt, A. E., Koehn, L. E., Curchitser, E., Hurtado-Ferro, F., Johnson, K. F., Lluch-Cota, S. E., Sydeman, W. J., Essington, T. E., Taylor, N., Holsman, K., MacCall, A. D. & Levin, P. S., Jan 1 2019, In : Marine Ecology Progress Series. 617-618, p. 307-321 15 p.

Research output: Contribution to journalArticle

Open Access
Sardinops sagax
food webs
food web
sardines
ecosystems

A mutation inactivating the distal SF1 binding site on the human anti-Müllerian hormone promoter causes persistent Müllerian duct syndrome

Schteingart, H. F., Picard, J. Y., Valeri, C., Marshall, I., Treton, D., Di Clemente, N., Rey, R. A. & Josso, N., Oct 1 2019, In : Human molecular genetics. 28, 19, p. 3211-3218 8 p.

Research output: Contribution to journalArticle

Steroidogenic Factor 1
Binding Sites
Hormones
Mutation
Response Elements
4 Citations (Scopus)

Amyloid Plaques of Alzheimer’s Disease as Hotspots of Glutamatergic Activity

Ovsepian, S. V., O’Leary, V. B., Zaborszky, L., Ntziachristos, V. & Dolly, J. O., Aug 1 2019, In : Neuroscientist. 25, 4, p. 288-297 10 p.

Research output: Contribution to journalArticle

Amyloid Plaques
Alzheimer Disease
Glutamic Acid
Synaptic Vesicles
Memory Disorders

An adaptive thresholding-based process variability monitoring

Abdella, G. M., Kim, J., Kim, S., Al-Khalifa, K. N., Jeong, M. K. M. K., Hamouda, A. M. & Elsayed, E. A., Jul 3 2019, In : Journal of Quality Technology. 51, 3, p. 242-256 15 p.

Research output: Contribution to journalArticle

Process monitoring
Covariance matrix
Monitoring
Tuning
Semiconductor materials

An age control transport protocol for delivering fresh updates in the internet-of-things

Shreedhar, T., Kaul, S. K. & Yates, R. D., Jun 2019, 20th IEEE International Symposium on A World of Wireless, Mobile and Multimedia Networks, WoWMoM 2019. Institute of Electrical and Electronics Engineers Inc., 8793011. (20th IEEE International Symposium on A World of Wireless, Mobile and Multimedia Networks, WoWMoM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Network protocols
Internet
Internet of things
Monitoring
Experiments
1 Citation (Scopus)

An algebraic formulation of the locality principle in renormalisation

Clavier, P., Guo, L., Paycha, S. & Zhang, B., Jun 15 2019, In : European Journal of Mathematics. 5, 2, p. 356-394 39 p.

Research output: Contribution to journalArticle

Locality
Renormalization
Formulation
Factorization
Cone

An algebraic study of multivariable integration and linear substitution

Rosenkranz, M., Gao, X. & Guo, L., Nov 1 2019, In : Journal of Algebra and its Applications. 18, 11, 1950207.

Research output: Contribution to journalArticle

Substitution
Substitution reactions
Operator
Bialgebra
Algebraic Theory
1 Citation (Scopus)

An algorithmic separating hyperplane theorem and its applications

Kalantari, B., Mar 15 2019, In : Discrete Applied Mathematics. 256, p. 59-82 24 p.

Research output: Contribution to journalArticle

Hyperplane
Iteration
Triangle
Theorem
Pivot
17 Citations (Scopus)

An alternative mitophagy pathway mediated by Rab9 protects the heart against ischemia

Saito, T., Nah, J., Oka, S. I., Mukai, R., Monden, Y., Maejima, Y., Ikeda, Y., Sciarretta, S., Liu, T., Li, H., Baljinnyam, E., Fraidenraich, D., Fritzky, L., Zhai, P., Ichinose, S., Isobe, M., Hsu, C. P., Kundu, M. & Sadoshima, J., Feb 1 2019, In : Journal of Clinical Investigation. 129, 2, p. 802-819 18 p.

Research output: Contribution to journalArticle

Mitochondrial Degradation
Autophagy
Ischemia
Mitochondria
Dynamins

Analysing the policy space for the promotion of healthy, sustainable edible oil consumption in India

Cuevas, S., Downs, S. M., Ghosh-Jerath, S., Aafrin & Shankar, B., Dec 1 2019, In : Public Health Nutrition. 22, 18, p. 3435-3446 12 p.

Research output: Contribution to journalArticle

India
Oils
Food Supply
Policy Making
Oil and Gas Fields
4 Citations (Scopus)

Analysis of an improved Cyanophora paradoxa genome assembly

Price, D. C., Goodenough, U. W., Roth, R., Lee, J. H., Kariyawasam, T., Mutwil, M., Ferrari, C., Facchinelli, F., Ball, S. G., Cenci, U., Chan, C. X., Wagner, N. E., Yoon, H. S., Weber, A. P. M. & Bhattacharya, D., Aug 1 2019, In : DNA research : an international journal for rapid publication of reports on genes and genomes. 26, 4, p. 287-299 13 p.

Research output: Contribution to journalArticle

Open Access
Cyanophora
Viridiplantae
Rhodophyta
Peptidoglycan
Genome
2 Citations (Scopus)

Analysis of blood lead levels of young children in Flint, Michigan before and during the 18-month switch to Flint River water

Gómez, H. F., Borgialli, D. A., Sharman, M., Shah, K. K., Scolpino, A. J., Oleske, J. M. & Bogden, J. D., Sep 2 2019, In : Clinical Toxicology. 57, 9, p. 790-797 8 p.

Research output: Contribution to journalArticle

Rivers
Blood
Switches
Water
Lead

Analysis of brain and cerebrospinal fluid from mouse models of the three major forms of neuronal ceroid lipofuscinosis reveals changes in the lysosomal proteome

Sleat, D. E., Wiseman, J. A., El-Banna, M., Zheng, H., Zhao, C., Soherwardy, A., Moore, D. F. & Lobel, P., Jan 1 2019, In : Molecular and Cellular Proteomics. 18, 11, p. 2244-2261 18 p.

Research output: Contribution to journalArticle

Ceroid
Neuronal Ceroid-Lipofuscinoses
Cerebrospinal fluid
Proteome
Cerebrospinal Fluid

Analysis of freight train collision risk in the United States

Turla, T., Liu, X. & Zhang, Z., Sep 1 2019, In : Proceedings of the Institution of Mechanical Engineers, Part F: Journal of Rail and Rapid Transit. 233, 8, p. 817-830 14 p.

Research output: Contribution to journalArticle

Accidents
Railroads
Rails
Railroad crossings
Derailments