A boosted distance metric: Application to content based image retrieval and classification of digitized histopathology

Jay Naik, Scott Doyle, Ajay Basavanally, Shridar Ganesan, Michael D. Feldman, John E. Tomaszewski, Anant Madabhushi

Research output: Chapter in Book/Report/Conference proceedingConference contribution

19 Scopus citations

Abstract

Distance metrics are often used as a way to compare the similarity of two objects, each represented by a set of features in high-dimensional space. The Euclidean metric is a popular distance metric, employed for a variety of applications. Non-Euclidean distance metrics have also been proposed, and the choice of distance metric for any specific application or domain is a non-trivial task. Furthermore, most distance metrics treat each dimension or object feature as having the same relative importance in determining object similarity. In many applications, such as in Content-Based Image Retrieval (CBIR), where images are quantified and then compared according to their image content, it may be beneficial to utilize a similarity metric where features are weighted according to their ability to distinguish between object classes. In the CBIR paradigm, every image is represented as a vector of quantitative feature values derived from the image content, and a similarity measure is applied to determine which of the database images is most similar to the query. In this work, we present a boosted distance metric (BDM), where individual features are weighted according to their discriminatory power, and compare the performance of this metric to 9 other traditional distance metrics in a CBIR system for digital histopathology. We apply our system to three different breast tissue histology cohorts - (1) 54 breast histology studies corresponding to benign and cancerous images, (2) 36 breast cancer studies corresponding to low and high Bloom-Richardson (BR) grades, and (3) 41 breast cancer studies with high and low levels of lymphocytic infiltration. Over all 3 data cohorts, the BDM performs better compared to 9 traditional metrics, with a greater area under the precision-recall curve. In addition, we performed SVM classification using the BDM along with the traditional metrics, and found that the boosted metric achieves a higher classification accuracy (over 96%) in distinguishing between the tissue classes in each of 3 data cohorts considered. The 10 different similarity metrics were also used to generate similarity matrices between all samples in each of the 3 cohorts. For each cohort, each of the 10 similarity matrices were subjected to normalized cuts, resulting in a reduced dimensional representation of the data samples. The BDM resulted in the best discrimination between tissue classes in the reduced embedding space.

Original languageEnglish (US)
Title of host publicationMedical Imaging 2009
Subtitle of host publicationComputer-Aided Diagnosis
DOIs
StatePublished - 2009
EventMedical Imaging 2009: Computer-Aided Diagnosis - Lake Buena Vista, FL, United States
Duration: Feb 10 2009Feb 12 2009

Publication series

NameProgress in Biomedical Optics and Imaging - Proceedings of SPIE
Volume7260
ISSN (Print)1605-7422

Other

OtherMedical Imaging 2009: Computer-Aided Diagnosis
Country/TerritoryUnited States
CityLake Buena Vista, FL
Period2/10/092/12/09

All Science Journal Classification (ASJC) codes

  • Electronic, Optical and Magnetic Materials
  • Biomaterials
  • Atomic and Molecular Physics, and Optics
  • Radiology Nuclear Medicine and imaging

Keywords

  • Boosted distance metric (BDM)
  • Breast cancer
  • CBIR
  • Distance metric
  • Graph Embedding
  • Lymphocytic infiltration
  • Precision-Recall
  • SVM
  • Similarity
  • histopathology

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