A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes

Hong Xiang Liu, Luca Cartegni, Michael Q. Zhang, Adrian R. Krainer

Research output: Contribution to journalArticlepeer-review

378 Scopus citations

Abstract

Point mutations can generate defective and sometimes harmful proteins. The nonsense-mediated mRNA decay (NMD) pathway minimizes the potential damage caused by nonsense mutations 1-4. In-frame nonsense codons located at a minimum distance upstream of the last exon-exon junction are recognized as premature termination codons (PTCs), targeting the mRNA for degradation. Some nonsense mutations cause skipping of one or more exons, presumably during pre-mRNA splicing in the nucleus; this phenomenon is termed nonsense-mediated altered splicing (NAS), and its underlying mechanism is unclear1,2,5,6. By analyzing NAS in BRCA1, we show here that inappropriate exon skipping can be reproduced in vitro, and results from disruption of a splicing enhancer in the coding sequence. Enhancers can be disrupted by single nonsense, missense and translationally silent point mutations, without recognition of an open reading frame as such. These results argue against a nuclear reading-frame scanning mechanism for NAS. Coding-region single-nucleotide polymorphisms7 (cSNPs) within exonic splicing enhancers or silencers may affect the patterns or efficiency of mRNA splicing, which may in turn cause phenotypic variability and variable penetrance of mutations elsewhere in a gene.

Original languageEnglish (US)
Pages (from-to)55-58
Number of pages4
JournalNature genetics
Volume27
Issue number1
DOIs
StatePublished - Jan 20 2001
Externally publishedYes

All Science Journal Classification (ASJC) codes

  • Genetics

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