Blind testing of routine, fully automated determination of protein structures from nmr data

Antonio Rosato, James M. Aramini, Cheryl Arrowsmith, Anurag Bagaria, David Baker, Andrea Cavalli, Jurgen F. Doreleijers, Alexander Eletsky, Andrea Giachetti, Paul Guerry, Aleksandras Gutmanas, Peter Güntert, Yunfen He, Torsten Herrmann, Yuanpeng J. Huang, Victor Jaravine, Hendrik R.A. Jonker, Michael A. Kennedy, Oliver F. Lange, Gaohua LiuThérse E. Malliavin, Rajeswari Mani, Binchen Mao, Gaetano T. Montelione, Michael Nilges, Paolo Rossi, Gijs Van Der Schot, Harald Schwalbe, Thomas A. Szyperski, Michele Vendruscolo, Robert Vernon, Wim F. Vranken, Sjoerd De Vries, Geerten W. Vuister, Bin Wu, Yunhuang Yang, Alexandre M.J.J. Bonvin

Research output: Contribution to journalArticlepeer-review

66 Scopus citations

Abstract

The protocols currently used for protein structure determination by nuclear magnetic resonance (NMR) depend on the determination of a large number of upper distance limits for proton-proton pairs. Typically, this task is performed manually by an experienced researcher rather than automatically by using a specific computer program. To assess whether it is indeed possible to generate in a fully automated manner NMR structures adequate for deposition in the Protein Data Bank, we gathered 10 experimental data sets with unassigned nuclear Overhauser effect spectroscopy (NOESY) peak lists for various proteins of unknown structure, computed structures for each of them using different, fully automatic programs, and compared the results to each other and to the manually solved reference structures that were not available at the time the data were provided. This constitutes a stringent "blind" assessment similar to the CASP and CAPRI initiatives. This study demonstrates the feasibility of routine, fully automated protein structure determination by NMR.

Original languageEnglish (US)
Pages (from-to)227-236
Number of pages10
JournalStructure
Volume20
Issue number2
DOIs
StatePublished - Feb 8 2012

All Science Journal Classification (ASJC) codes

  • Structural Biology
  • Molecular Biology

Fingerprint

Dive into the research topics of 'Blind testing of routine, fully automated determination of protein structures from nmr data'. Together they form a unique fingerprint.

Cite this