Control-theoretic methods for biological networks

Franco Blanchini, Hana Ei-Samad, Giulia Giordano, Eduardo Sontag

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Abstract

Feedback is both a pillar of control theory and a pervasive principle of nature. For this reason, control-theoretic methods are powerful to analyse the dynamic behaviour of biological systems and mathematically explain their properties, as well as to engineer biological systems so that they perform a specific task by design. This paper illustrates the relevance of control-theoretic methods for biological systems. The first part gives an overview of biological control and of the versatile ways in which cells use feedback. By employing control-theoretic methods, the complexity of interlaced feedback loops in the cell can be revealed and explained, and layered feedback loops can be designed in the cell to induce the desired behaviours, such as oscillations, multi-stability and activity regulation. The second part is mainly devoted to modelling uncertainty in biology and understanding the robustness of biological phenomena due to their inherent structure. Important control-theoretic tools used in systems biology are surveyed. The third part is focused on tools for model discrimination in systems biology. A deeper understanding of molecular pathways and feedback loops, as well as qualitative information on biological networks, can be achieved by studying the 'dynamic response phenotypes' that appear in temporal responses. Several applications to the analysis of biological systems are showcased.

Original languageEnglish (US)
Title of host publication2018 IEEE Conference on Decision and Control, CDC 2018
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages466-483
Number of pages18
ISBN (Electronic)9781538613955
DOIs
StatePublished - Jan 18 2019
Event57th IEEE Conference on Decision and Control, CDC 2018 - Miami, United States
Duration: Dec 17 2018Dec 19 2018

Publication series

NameProceedings of the IEEE Conference on Decision and Control
Volume2018-December
ISSN (Print)0743-1546

Conference

Conference57th IEEE Conference on Decision and Control, CDC 2018
CountryUnited States
CityMiami
Period12/17/1812/19/18

Fingerprint

Biological Networks
Biological Systems
Biological systems
Feedback Loop
Feedback
Systems Biology
Cell
Model Discrimination
Biological Control
Multistability
Uncertainty Modeling
Dynamic Response
Control Theory
Phenotype
Dynamic Behavior
Biology
Pathway
Control theory
Dynamic response
Oscillation

All Science Journal Classification (ASJC) codes

  • Control and Systems Engineering
  • Modeling and Simulation
  • Control and Optimization

Cite this

Blanchini, F., Ei-Samad, H., Giordano, G., & Sontag, E. (2019). Control-theoretic methods for biological networks. In 2018 IEEE Conference on Decision and Control, CDC 2018 (pp. 466-483). [8618943] (Proceedings of the IEEE Conference on Decision and Control; Vol. 2018-December). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/CDC.2018.8618943
Blanchini, Franco ; Ei-Samad, Hana ; Giordano, Giulia ; Sontag, Eduardo. / Control-theoretic methods for biological networks. 2018 IEEE Conference on Decision and Control, CDC 2018. Institute of Electrical and Electronics Engineers Inc., 2019. pp. 466-483 (Proceedings of the IEEE Conference on Decision and Control).
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Blanchini, F, Ei-Samad, H, Giordano, G & Sontag, E 2019, Control-theoretic methods for biological networks. in 2018 IEEE Conference on Decision and Control, CDC 2018., 8618943, Proceedings of the IEEE Conference on Decision and Control, vol. 2018-December, Institute of Electrical and Electronics Engineers Inc., pp. 466-483, 57th IEEE Conference on Decision and Control, CDC 2018, Miami, United States, 12/17/18. https://doi.org/10.1109/CDC.2018.8618943

Control-theoretic methods for biological networks. / Blanchini, Franco; Ei-Samad, Hana; Giordano, Giulia; Sontag, Eduardo.

2018 IEEE Conference on Decision and Control, CDC 2018. Institute of Electrical and Electronics Engineers Inc., 2019. p. 466-483 8618943 (Proceedings of the IEEE Conference on Decision and Control; Vol. 2018-December).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

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Blanchini F, Ei-Samad H, Giordano G, Sontag E. Control-theoretic methods for biological networks. In 2018 IEEE Conference on Decision and Control, CDC 2018. Institute of Electrical and Electronics Engineers Inc. 2019. p. 466-483. 8618943. (Proceedings of the IEEE Conference on Decision and Control). https://doi.org/10.1109/CDC.2018.8618943