Data management challenges in three-dimensional em

Ardan Patwardhan; José Maria Carazo; Bridget Carragher; Richard Henderson; J. Bernard Heymann; Emma Hill; Grant J. Jensen; Ingvar Lagerstedt; Catherine L. Lawson; Steven J. Ludtke; David Mastronarde; William J. Moore; Alan Roseman; Peter Rosenthal; Carlos Oscar S. Sorzano; Eduardo Sanz-García; Sjors H.W. Scheres; Sriram Subramaniam; John Westbrook; Martyn Winn; Jason R. Swedlow; Gerard J. Kleywegt

doi:10.1038/nsmb.2426

Data management challenges in three-dimensional em

Ardan Patwardhan, José Maria Carazo, Bridget Carragher, Richard Henderson, J. Bernard Heymann, Emma Hill, Grant J. Jensen, Ingvar Lagerstedt, Catherine L. Lawson, Steven J. Ludtke, David Mastronarde, William J. Moore, Alan Roseman, Peter Rosenthal, Carlos Oscar S. Sorzano, Eduardo Sanz-García, Sjors H.W. Scheres, Sriram Subramaniam, John Westbrook, Martyn WinnJason R. Swedlow, Gerard J. Kleywegt

Institute for Quantitative Biomedicine (IQB)

Research output: Contribution to journal › Review article › peer-review

32 Scopus citations

Original language	English (US)
Pages (from-to)	1203-1207
Number of pages	5
Journal	Nature Structural and Molecular Biology
Volume	19
Issue number	12
DOIs	https://doi.org/10.1038/nsmb.2426
State	Published - Dec 2012

All Science Journal Classification (ASJC) codes

Structural Biology
Molecular Biology

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10.1038/nsmb.2426

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Patwardhan, A., Carazo, J. M., Carragher, B., Henderson, R., Heymann, J. B., Hill, E., Jensen, G. J., Lagerstedt, I., Lawson, C. L., Ludtke, S. J., Mastronarde, D., Moore, W. J., Roseman, A., Rosenthal, P., Sorzano, C. O. S., Sanz-García, E., Scheres, S. H. W., Subramaniam, S., Westbrook, J., ... Kleywegt, G. J. (2012). Data management challenges in three-dimensional em. Nature Structural and Molecular Biology, 19(12), 1203-1207. https://doi.org/10.1038/nsmb.2426

@article{d62e9ebe233141059d1b3e8f5b3f9e76,

title = "Data management challenges in three-dimensional em",

author = "Ardan Patwardhan and Carazo, {Jos{\'e} Maria} and Bridget Carragher and Richard Henderson and Heymann, {J. Bernard} and Emma Hill and Jensen, {Grant J.} and Ingvar Lagerstedt and Lawson, {Catherine L.} and Ludtke, {Steven J.} and David Mastronarde and Moore, {William J.} and Alan Roseman and Peter Rosenthal and Sorzano, {Carlos Oscar S.} and Eduardo Sanz-Garc{\'i}a and Scheres, {Sjors H.W.} and Sriram Subramaniam and John Westbrook and Martyn Winn and Swedlow, {Jason R.} and Kleywegt, {Gerard J.}",

note = "Funding Information: for Electron Cryo-microscopy (CCP-EM), and outlined experiences gained with CCP4 and possible synergies with CCP-EM. Three participants from the University of Dundee represented the OME team, which develops scientific image-file-translation libraries and data-management applications12,13. PDBe and OME work together to apply OME resources to 3DEM data in the EMDB, and the workshop was sponsored by a joint Biotechnology and Biological Sciences Research Council (BBSRC) grant that stimulates collaboration between groups with expertise in handling 3DEM and light-microscopy data. Finally, six participants represented the EMDataBank. Funding Information: We thank P. Haslam for help with the manuscript. This workshop and the OMERO-EMDB project are supported by the BBSRC (BB/G022577). The EMDataBank is funded by the US National Institutes of Health National Institute of General Medical Sciences (R01GM079429). The work on the EMDB at the PDBe also profits from funding by European Molecular Biology Laboratory–EBI and the Wellcome Trust (088944).",

year = "2012",

month = dec,

doi = "10.1038/nsmb.2426",

language = "English (US)",

volume = "19",

pages = "1203--1207",

journal = "Nature Structural and Molecular Biology",

issn = "1545-9993",

publisher = "Nature Publishing Group",

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Patwardhan, A, Carazo, JM, Carragher, B, Henderson, R, Heymann, JB, Hill, E, Jensen, GJ, Lagerstedt, I, Lawson, CL, Ludtke, SJ, Mastronarde, D, Moore, WJ, Roseman, A, Rosenthal, P, Sorzano, COS, Sanz-García, E, Scheres, SHW, Subramaniam, S, Westbrook, J, Winn, M, Swedlow, JR & Kleywegt, GJ 2012, 'Data management challenges in three-dimensional em', Nature Structural and Molecular Biology, vol. 19, no. 12, pp. 1203-1207. https://doi.org/10.1038/nsmb.2426

TY - JOUR

T1 - Data management challenges in three-dimensional em

AU - Patwardhan, Ardan

AU - Carazo, José Maria

AU - Carragher, Bridget

AU - Henderson, Richard

AU - Heymann, J. Bernard

AU - Hill, Emma

AU - Jensen, Grant J.

AU - Lagerstedt, Ingvar

AU - Lawson, Catherine L.

AU - Ludtke, Steven J.

AU - Mastronarde, David

AU - Moore, William J.

AU - Roseman, Alan

AU - Rosenthal, Peter

AU - Sorzano, Carlos Oscar S.

AU - Sanz-García, Eduardo

AU - Scheres, Sjors H.W.

AU - Subramaniam, Sriram

AU - Westbrook, John

AU - Winn, Martyn

AU - Swedlow, Jason R.

AU - Kleywegt, Gerard J.

N1 - Funding Information: for Electron Cryo-microscopy (CCP-EM), and outlined experiences gained with CCP4 and possible synergies with CCP-EM. Three participants from the University of Dundee represented the OME team, which develops scientific image-file-translation libraries and data-management applications12,13. PDBe and OME work together to apply OME resources to 3DEM data in the EMDB, and the workshop was sponsored by a joint Biotechnology and Biological Sciences Research Council (BBSRC) grant that stimulates collaboration between groups with expertise in handling 3DEM and light-microscopy data. Finally, six participants represented the EMDataBank. Funding Information: We thank P. Haslam for help with the manuscript. This workshop and the OMERO-EMDB project are supported by the BBSRC (BB/G022577). The EMDataBank is funded by the US National Institutes of Health National Institute of General Medical Sciences (R01GM079429). The work on the EMDB at the PDBe also profits from funding by European Molecular Biology Laboratory–EBI and the Wellcome Trust (088944).

PY - 2012/12

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U2 - 10.1038/nsmb.2426

DO - 10.1038/nsmb.2426

M3 - Review article

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AN - SCOPUS:84870846397

SN - 1545-9993

VL - 19

SP - 1203

EP - 1207

JO - Nature Structural and Molecular Biology

JF - Nature Structural and Molecular Biology

IS - 12

ER -

Data management challenges in three-dimensional em

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