DCC: A Swiss army knife for structure factor analysis and validation

Huanwang Yang; Ezra Peisach; John Westbrook; Jasmine Young; Helen Berman; Stephen K. Burley

doi:10.1107/S1600576716004428

DCC: A Swiss army knife for structure factor analysis and validation

Huanwang Yang, Ezra Peisach, John Westbrook, Jasmine Young, Helen Berman, Stephen K. Burley

Research output: Contribution to journal › Article › peer-review

20 Scopus citations

Abstract

Since 2008, X-ray structure depositions to the Protein Data Bank archive (PDB) have required submission of experimental data in the form of structure factor files. RCSB PDB has developed the program DCC to allow worldwide PDB (wwPDB; http://wwpdb.org) biocurators, using a single command-line program, to invoke a number of third-party software packages to compare the model file with the experimental data. DCC functionality includes structure factor validation, electron-density map generation and slicing, local electron-density analysis, and residual B factor analysis. DCC outputs a summary containing various crystallographic statistics in PDBx/mmCIF format for use in automatic data processing and archiving pipelines.

Original language	English (US)
Pages (from-to)	1081-1084
Number of pages	4
Journal	Journal of Applied Crystallography
Volume	49
DOIs	https://doi.org/10.1107/S1600576716004428
State	Published - 2016

All Science Journal Classification (ASJC) codes

General Biochemistry, Genetics and Molecular Biology

Keywords

DCC
Protein data bank
Structure factor validation
Utility programs

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10.1107/S1600576716004428

Cite this

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title = "DCC: A Swiss army knife for structure factor analysis and validation",

abstract = "Since 2008, X-ray structure depositions to the Protein Data Bank archive (PDB) have required submission of experimental data in the form of structure factor files. RCSB PDB has developed the program DCC to allow worldwide PDB (wwPDB; http://wwpdb.org) biocurators, using a single command-line program, to invoke a number of third-party software packages to compare the model file with the experimental data. DCC functionality includes structure factor validation, electron-density map generation and slicing, local electron-density analysis, and residual B factor analysis. DCC outputs a summary containing various crystallographic statistics in PDBx/mmCIF format for use in automatic data processing and archiving pipelines.",

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doi = "10.1107/S1600576716004428",

language = "English (US)",

volume = "49",

pages = "1081--1084",

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T1 - DCC

T2 - A Swiss army knife for structure factor analysis and validation

AU - Yang, Huanwang

AU - Peisach, Ezra

AU - Westbrook, John

AU - Young, Jasmine

AU - Berman, Helen

AU - Burley, Stephen K.

PY - 2016

Y1 - 2016

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AB - Since 2008, X-ray structure depositions to the Protein Data Bank archive (PDB) have required submission of experimental data in the form of structure factor files. RCSB PDB has developed the program DCC to allow worldwide PDB (wwPDB; http://wwpdb.org) biocurators, using a single command-line program, to invoke a number of third-party software packages to compare the model file with the experimental data. DCC functionality includes structure factor validation, electron-density map generation and slicing, local electron-density analysis, and residual B factor analysis. DCC outputs a summary containing various crystallographic statistics in PDBx/mmCIF format for use in automatic data processing and archiving pipelines.

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KW - Utility programs

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DCC: A Swiss army knife for structure factor analysis and validation

Abstract

All Science Journal Classification (ASJC) codes

Keywords

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