Genomic structure and expression of the murine Hmgi(y) gene

Jun Liu, John F. Schiltz, Pritesh C. Shah, Kathleen F. Benson, Kiran Chada

Research output: Contribution to journalArticle

15 Citations (Scopus)

Abstract

Mammalian HMGI proteins belong to the high mobility group (HMG) of small non-histone nuclear proteins, and function as architectural factors to mediate structural changes in DNA. The HMGI family consists of three members: HMGI, HMGY and HMGI-C. As pseudogenes have complicated the genomic analysis of murine Hmgi(y), a mouse lambda FIX II genomic library was screened with an intron-specific probe to identify and characterize the authentic Hmgi(y) gene. The murine Hmgi(y) gene is 7.2 kb long and contains four protein coding exons and two additional exons encoding part of the 5' untranslated region. Sequencing confirms that an alternative splicing site within exon 3 results in the two protein isoforms: Hmgi and Hmgy. Primer extension experiments revealed that at least three transcription start sites exist in the 5' end of the gene. It has been well established that the expression of both Hmgi-c and Hmgi(y) is readily detectable throughout embryogenesis. Unlike Hmgi-c, whose expression is restricted to embryogenesis, a Northern hybridization analysis showed low-level expression of Hmgi(y) in adult mouse tissues. Similarly, when tissues from newborn animals were examined, Hmgi(y) expression was readily detected at a level of intensity intermediate between that found in embryos and adults. Understanding the gene structure and expression pattern will provide important insights into the in-vivo function of Hmgi(y). (C) 2000 Elsevier Science B.V. All rights reserved.

Original languageEnglish (US)
Pages (from-to)197-207
Number of pages11
JournalGene
Volume246
Issue number1-2
DOIs
StatePublished - Apr 4 2000

Fingerprint

Exons
Embryonic Development
HMGA1a Protein
Genes
Newborn Animals
Pseudogenes
Genomic Library
5' Untranslated Regions
Transcription Initiation Site
Alternative Splicing
Nuclear Proteins
Introns
Protein Isoforms
Embryonic Structures
Gene Expression
DNA
Proteins

All Science Journal Classification (ASJC) codes

  • Genetics

Keywords

  • Architectural factors
  • Embryogenesis
  • HMGI
  • High mobility group proteins
  • Mouse genome
  • Temporal and tissue-specific expression

Cite this

Liu, J., Schiltz, J. F., Shah, P. C., Benson, K. F., & Chada, K. (2000). Genomic structure and expression of the murine Hmgi(y) gene. Gene, 246(1-2), 197-207. https://doi.org/10.1016/S0378-1119(00)00073-1
Liu, Jun ; Schiltz, John F. ; Shah, Pritesh C. ; Benson, Kathleen F. ; Chada, Kiran. / Genomic structure and expression of the murine Hmgi(y) gene. In: Gene. 2000 ; Vol. 246, No. 1-2. pp. 197-207.
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Liu, J, Schiltz, JF, Shah, PC, Benson, KF & Chada, K 2000, 'Genomic structure and expression of the murine Hmgi(y) gene', Gene, vol. 246, no. 1-2, pp. 197-207. https://doi.org/10.1016/S0378-1119(00)00073-1

Genomic structure and expression of the murine Hmgi(y) gene. / Liu, Jun; Schiltz, John F.; Shah, Pritesh C.; Benson, Kathleen F.; Chada, Kiran.

In: Gene, Vol. 246, No. 1-2, 04.04.2000, p. 197-207.

Research output: Contribution to journalArticle

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AU - Liu, Jun

AU - Schiltz, John F.

AU - Shah, Pritesh C.

AU - Benson, Kathleen F.

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AB - Mammalian HMGI proteins belong to the high mobility group (HMG) of small non-histone nuclear proteins, and function as architectural factors to mediate structural changes in DNA. The HMGI family consists of three members: HMGI, HMGY and HMGI-C. As pseudogenes have complicated the genomic analysis of murine Hmgi(y), a mouse lambda FIX II genomic library was screened with an intron-specific probe to identify and characterize the authentic Hmgi(y) gene. The murine Hmgi(y) gene is 7.2 kb long and contains four protein coding exons and two additional exons encoding part of the 5' untranslated region. Sequencing confirms that an alternative splicing site within exon 3 results in the two protein isoforms: Hmgi and Hmgy. Primer extension experiments revealed that at least three transcription start sites exist in the 5' end of the gene. It has been well established that the expression of both Hmgi-c and Hmgi(y) is readily detectable throughout embryogenesis. Unlike Hmgi-c, whose expression is restricted to embryogenesis, a Northern hybridization analysis showed low-level expression of Hmgi(y) in adult mouse tissues. Similarly, when tissues from newborn animals were examined, Hmgi(y) expression was readily detected at a level of intensity intermediate between that found in embryos and adults. Understanding the gene structure and expression pattern will provide important insights into the in-vivo function of Hmgi(y). (C) 2000 Elsevier Science B.V. All rights reserved.

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