High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment

Tiffany S. Louie; Donato Giovannelli; Nathan Yee; Priya Narasingarao; Valentin Starovoytov; Markus Göker; Hans Peter Klenk; Elke Lang; Nikos C. Kyrpides; Tanja Woyke; Elisabetta Bini; Max M. Häggblom

doi:10.1186/s40793-016-0191-5

High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1^T, a gammaproteobacterium isolated from estuarine sediment

Tiffany S. Louie, Donato Giovannelli, Nathan Yee, Priya Narasingarao, Valentin Starovoytov, Markus Göker, Hans Peter Klenk, Elke Lang, Nikos C. Kyrpides, Tanja Woyke, Elisabetta Bini, Max M. Häggblom

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Abstract

Sedimenticola selenatireducens strain AK4OH1^T (= DSM 17993^T = ATCC BAA-1233^T) is a microaerophilic bacterium isolated from sediment from the Arthur Kill intertidal strait between New Jersey and Staten Island, NY. S. selenatireducens is Gram-negative and belongs to the Gammaproteobacteria. Strain AK4OH1^T was the first representative of its genus to be isolated for its unique coupling of the oxidation of aromatic acids to the respiration of selenate. It is a versatile heterotroph and can use a variety of carbon compounds, but can also grow lithoautotrophically under hypoxic and anaerobic conditions. The draft genome comprises 4,588,530 bp and 4276 predicted protein-coding genes including genes for the anaerobic degradation of 4-hydroxybenzoate and benzoate. Here we report the main features of the genome of S. selenatireducens strain AK4OH1^T.

Original language	English (US)
Article number	66
Journal	Standards in Genomic Sciences
Volume	11
Issue number	1
DOIs	https://doi.org/10.1186/s40793-016-0191-5
State	Published - Jan 4 2016

All Science Journal Classification (ASJC) codes

Genetics

Keywords

4-hydroxybenzoate
Anaerobe
Gammaproteobacteria
Sedimenticola selenatireducens
Selenate respiration

Access to Document

10.1186/s40793-016-0191-5

Cite this

Louie, T. S., Giovannelli, D., Yee, N., Narasingarao, P., Starovoytov, V., Göker, M., Klenk, H. P., Lang, E., Kyrpides, N. C., Woyke, T., Bini, E., & Häggblom, M. M. (2016). High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1^T, a gammaproteobacterium isolated from estuarine sediment. Standards in Genomic Sciences, 11(1), Article 66. https://doi.org/10.1186/s40793-016-0191-5

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title = "High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment",

abstract = "Sedimenticola selenatireducens strain AK4OH1T (= DSM 17993T = ATCC BAA-1233T) is a microaerophilic bacterium isolated from sediment from the Arthur Kill intertidal strait between New Jersey and Staten Island, NY. S. selenatireducens is Gram-negative and belongs to the Gammaproteobacteria. Strain AK4OH1T was the first representative of its genus to be isolated for its unique coupling of the oxidation of aromatic acids to the respiration of selenate. It is a versatile heterotroph and can use a variety of carbon compounds, but can also grow lithoautotrophically under hypoxic and anaerobic conditions. The draft genome comprises 4,588,530 bp and 4276 predicted protein-coding genes including genes for the anaerobic degradation of 4-hydroxybenzoate and benzoate. Here we report the main features of the genome of S. selenatireducens strain AK4OH1T.",

keywords = "4-hydroxybenzoate, Anaerobe, Gammaproteobacteria, Sedimenticola selenatireducens, Selenate respiration",

author = "Louie, {Tiffany S.} and Donato Giovannelli and Nathan Yee and Priya Narasingarao and Valentin Starovoytov and Markus G{\"o}ker and Klenk, {Hans Peter} and Elke Lang and Kyrpides, {Nikos C.} and Tanja Woyke and Elisabetta Bini and H{\"a}ggblom, {Max M.}",

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doi = "10.1186/s40793-016-0191-5",

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Louie, TS, Giovannelli, D, Yee, N, Narasingarao, P, Starovoytov, V, Göker, M, Klenk, HP, Lang, E, Kyrpides, NC, Woyke, T, Bini, E & Häggblom, MM 2016, 'High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1^T, a gammaproteobacterium isolated from estuarine sediment', Standards in Genomic Sciences, vol. 11, no. 1, 66. https://doi.org/10.1186/s40793-016-0191-5

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AU - Louie, Tiffany S.

AU - Giovannelli, Donato

AU - Yee, Nathan

AU - Narasingarao, Priya

AU - Starovoytov, Valentin

AU - Göker, Markus

AU - Klenk, Hans Peter

AU - Lang, Elke

AU - Kyrpides, Nikos C.

AU - Woyke, Tanja

AU - Bini, Elisabetta

AU - Häggblom, Max M.

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N2 - Sedimenticola selenatireducens strain AK4OH1T (= DSM 17993T = ATCC BAA-1233T) is a microaerophilic bacterium isolated from sediment from the Arthur Kill intertidal strait between New Jersey and Staten Island, NY. S. selenatireducens is Gram-negative and belongs to the Gammaproteobacteria. Strain AK4OH1T was the first representative of its genus to be isolated for its unique coupling of the oxidation of aromatic acids to the respiration of selenate. It is a versatile heterotroph and can use a variety of carbon compounds, but can also grow lithoautotrophically under hypoxic and anaerobic conditions. The draft genome comprises 4,588,530 bp and 4276 predicted protein-coding genes including genes for the anaerobic degradation of 4-hydroxybenzoate and benzoate. Here we report the main features of the genome of S. selenatireducens strain AK4OH1T.

AB - Sedimenticola selenatireducens strain AK4OH1T (= DSM 17993T = ATCC BAA-1233T) is a microaerophilic bacterium isolated from sediment from the Arthur Kill intertidal strait between New Jersey and Staten Island, NY. S. selenatireducens is Gram-negative and belongs to the Gammaproteobacteria. Strain AK4OH1T was the first representative of its genus to be isolated for its unique coupling of the oxidation of aromatic acids to the respiration of selenate. It is a versatile heterotroph and can use a variety of carbon compounds, but can also grow lithoautotrophically under hypoxic and anaerobic conditions. The draft genome comprises 4,588,530 bp and 4276 predicted protein-coding genes including genes for the anaerobic degradation of 4-hydroxybenzoate and benzoate. Here we report the main features of the genome of S. selenatireducens strain AK4OH1T.

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KW - Anaerobe

KW - Gammaproteobacteria

KW - Sedimenticola selenatireducens

KW - Selenate respiration

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