Molecular characterization of two novel splice variants of G alphai2 in the rat vestibular periphery

Joseph A. Cioffi, P. Ashley Wackym, Christy B. Erbe, Wolfgang Gaggl, Paul Popper

Research output: Contribution to journalArticlepeer-review

2 Scopus citations

Abstract

GTP binding proteins play an important role in mediating signals transduced across the cell membrane by membrane-bound receptors. We previously described a partial sequence, termed Galphai2vest, obtained from rat vestibular tissue that was nearly identical to rat Galphai2. Using an experimental strategy to further characterize Galphai2vest (GenBank accession number AF189020) and identify other possible Galphai2-related transcripts expressed in the rat vestibular periphery, we employed a RecA-based gene enrichment protocol in place of conventional library screening techniques. We identified two novel Galphai2 splice variants, Galphai2(a) (GenBank accession number AY899210) and Galphai2(b) (GenBank accession number AY899211), that have most of exons 8 and 9 deleted, and exons 5 through 9 deleted, respectively. In situ hybridization studies were completed to determine the differential expression of Galphai2 between the vestibular primary afferent neurons and the vestibular end organs. Computer modeling and predicted 3D conformation of the wild type Galphai2 and the two splice variants were completed to evaluate the changes associated with the Gbetagamma and GTP binding sites. These two novel alternatively spliced isoforms of Galphai2 putatively encode truncated proteins that could serve unique roles in the physiology of the vestibular neuroepithelium. Galphai2vest was found to be a processed pseudogene.

Original languageEnglish (US)
Pages (from-to)89-97
Number of pages9
JournalMolecular Brain Research
Volume137
Issue number1-2
DOIs
StatePublished - Jun 13 2005

All Science Journal Classification (ASJC) codes

  • Molecular Biology
  • Cellular and Molecular Neuroscience

Keywords

  • Alternative splicing
  • Computer modeling
  • Efferent vestibular system
  • G protein
  • Pseudogene
  • Receptor
  • Vestibular

Fingerprint

Dive into the research topics of 'Molecular characterization of two novel splice variants of G alphai2 in the rat vestibular periphery'. Together they form a unique fingerprint.

Cite this