NetCmpt: A network-based tool for calculating the metabolic competition between bacterial species

Anat Kreimer, Adi Doron-Faigenboim, Elhanan Borenstein, Shiri Freilich

Research output: Contribution to journalArticlepeer-review

25 Scopus citations

Abstract

Summary: NetCmpt is a tool for calculating the competitive potential between pairs of bacterial species. The score describes the effective metabolic overlap (EMO) between two species, derived from analyzing the topology of the corresponding metabolic models. NetCmpt is based on the EMO algorithm, developed and validated in previous studies. It takes as input lists of species-specific enzymatic reactions (EC numbers) and generates a matrix of the potential competition scores between all pairwise combinations.

Original languageEnglish (US)
Article numberbts323
Pages (from-to)2195-2197
Number of pages3
JournalBioinformatics
Volume28
Issue number16
DOIs
StatePublished - Aug 2012
Externally publishedYes

All Science Journal Classification (ASJC) codes

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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