PAS-SNP: IOS App with GWAS SNP-Disease Database for Personalized Genomics Research: PAS-SNP for GWAS SNP-Disease

Zeeshan Ahmed, Saman Zeeshan, Bruce T. Liang

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

To efficiently fathom the wealth of genomics and clinical data, there is a crucial need to generate appropriate gene-disease annotation repositories accessed through modern resources. Our focus was to create a comprehensive database with mobile access to authentic Single Nucleotide Polymorphisms (SNPs) and classified diseases worldwide, considered as the foundation for clinical and genomics research, epidemiology and precision medicine. In this manuscript, we present non-profit, academic and publicly available iOS application, PAS-SNP, which invites global users to freely download it on iPhone iPad devices, effortlessly adopt it's easy to use interface and search for SNPs, genes and related diseases. PAS-SNP is developed with Swift multi-paradigm programming language, XCODE integrated development environment for MacOS, and PHP scripting that uses a MySQL server database, which includes over 67,000 SNPs reported for over 19,000 genes, from patients located in over 1000 regions, published in over 3000 articles in over 415 journals available at the PubMed, and over 100,000 classified SNP-disease combinations. It includes SNPs released and organized by the Genome-wide Association Study (GWAS). PAS-SNP is founded on the clinical and scientific premise to support and promote healthcare and genomics data sharing with technological advancements.

Original languageEnglish (US)
Title of host publicationProceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019
EditorsIllhoi Yoo, Jinbo Bi, Xiaohua Tony Hu
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages1962-1969
Number of pages8
ISBN (Electronic)9781728118673
DOIs
StatePublished - Nov 2019
Externally publishedYes
Event2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019 - San Diego, United States
Duration: Nov 18 2019Nov 21 2019

Publication series

NameProceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019

Conference

Conference2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019
Country/TerritoryUnited States
CitySan Diego
Period11/18/1911/21/19

All Science Journal Classification (ASJC) codes

  • Biochemistry
  • Biotechnology
  • Molecular Medicine
  • Modeling and Simulation
  • Health Informatics
  • Pharmacology (medical)
  • Public Health, Environmental and Occupational Health

Keywords

  • Disease
  • GWAS
  • Germline
  • SNP
  • iOS-App

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