TY - JOUR
T1 - Structure-enhanced local phase filtering using L0 gradient minimization for efficient semiautomated knee magnetic resonance imaging segmentation
AU - Lim, Mikhiel
AU - Hacihaliloglu, Ilker
N1 - Publisher Copyright:
© 2016 Society of Photo-Optical Instrumentation Engineers (SPIE).
PY - 2016/10/1
Y1 - 2016/10/1
N2 - The segmentation of bone surfaces from magnetic resonance imaging (MRI) data has applications in the quantitative measurement of knee osteoarthritis, surgery planning for patient-specific total knee arthroplasty, and its subsequent fabrication of artificial implants. However, due to the problems associated with MRI imaging, such as low contrast between bone and surrounding tissues, noise, bias fields, and the partial volume effect, segmentation of bone surfaces continues to be a challenging operation. A framework is presented for the enhancement of knee MRI scans prior to segmentation in order to obtain high contrast bone images. During the first stage, a contrast enhanced relative total variation regularization method is used in order to remove textural noise from the bone structures and surrounding soft tissue interface. This salient bone edge information is further enhanced using a sparse gradient counting method based on L0 gradient minimization, which globally controls how many nonzero gradients are resulted in order to approximate prominent bone structures in a structure-sparsity-management manner. The last stage of the framework involves incorporation of local phase bone boundary information in order to provide an intensity invariant enhancement of contrast between the bone and surrounding soft tissue. The enhanced images are segmented using a fast random walker algorithm. Validation against expert segmentation was performed on 20 clinical knee MRI volumes and achieved a mean dice similarity coefficient of 0.949.
AB - The segmentation of bone surfaces from magnetic resonance imaging (MRI) data has applications in the quantitative measurement of knee osteoarthritis, surgery planning for patient-specific total knee arthroplasty, and its subsequent fabrication of artificial implants. However, due to the problems associated with MRI imaging, such as low contrast between bone and surrounding tissues, noise, bias fields, and the partial volume effect, segmentation of bone surfaces continues to be a challenging operation. A framework is presented for the enhancement of knee MRI scans prior to segmentation in order to obtain high contrast bone images. During the first stage, a contrast enhanced relative total variation regularization method is used in order to remove textural noise from the bone structures and surrounding soft tissue interface. This salient bone edge information is further enhanced using a sparse gradient counting method based on L0 gradient minimization, which globally controls how many nonzero gradients are resulted in order to approximate prominent bone structures in a structure-sparsity-management manner. The last stage of the framework involves incorporation of local phase bone boundary information in order to provide an intensity invariant enhancement of contrast between the bone and surrounding soft tissue. The enhanced images are segmented using a fast random walker algorithm. Validation against expert segmentation was performed on 20 clinical knee MRI volumes and achieved a mean dice similarity coefficient of 0.949.
KW - knee osteoarthritis
KW - local phase
KW - segmentation
KW - smoothing
KW - total variation regularization
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U2 - 10.1117/1.JMI.3.4.044503
DO - 10.1117/1.JMI.3.4.044503
M3 - Article
AN - SCOPUS:85000607289
SN - 2329-4302
VL - 3
JO - Journal of Medical Imaging
JF - Journal of Medical Imaging
IS - 4
M1 - 044503
ER -