TargetDB: A target registration database for structural genomics projects

Li Chen; Rose Oughtred; Helen M. Berman; John Westbrook

doi:10.1093/bioinformatics/bth300

TargetDB: A target registration database for structural genomics projects

Li Chen, Rose Oughtred, Helen M. Berman, John Westbrook

Research output: Contribution to journal › Article › peer-review

151 Scopus citations

Abstract

Summary: TargetDB is a centralized target registration database that includes protein target data from the NIH structural genomics centers and a number of international sites. TargetDB, which is hosted by the Protein Data Bank (RCSB PDB), provides status information on target sequences and tracks their progress through the various stages of protein production and structure determination. A simple search form permits queries based on contributing site, target ID, protein name, sequence, status and other data. The progress of individual targets or entire structural genomics projects may be tracked overtime, and target data from all contributing centers may also be downloaded in the XML format.

Original language	English (US)
Pages (from-to)	2860-2862
Number of pages	3
Journal	Bioinformatics
Volume	20
Issue number	16
DOIs	https://doi.org/10.1093/bioinformatics/bth300
State	Published - Nov 1 2004

All Science Journal Classification (ASJC) codes

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/bth300

Cite this

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title = "TargetDB: A target registration database for structural genomics projects",

abstract = "Summary: TargetDB is a centralized target registration database that includes protein target data from the NIH structural genomics centers and a number of international sites. TargetDB, which is hosted by the Protein Data Bank (RCSB PDB), provides status information on target sequences and tracks their progress through the various stages of protein production and structure determination. A simple search form permits queries based on contributing site, target ID, protein name, sequence, status and other data. The progress of individual targets or entire structural genomics projects may be tracked overtime, and target data from all contributing centers may also be downloaded in the XML format.",

author = "Li Chen and Rose Oughtred and Berman, {Helen M.} and John Westbrook",

note = "Funding Information: The RCSB PDB is operated by Rutgers, The State University of NewJersey; The San Diego Supercomputer Center at the University of California, San Diego; and the Center for Advanced Research in Biotechnology of the National Institute of Standards and Technology—three members of the Research Collaboratory for Structural Bioinformatics (RCSB). The work reported in this paper has been supported by grants from the NSF, the DOE, and six units of the NIH: the NIGMS, NLM, NCI, NCRR, NIBIB and the NINDS.",

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doi = "10.1093/bioinformatics/bth300",

language = "English (US)",

volume = "20",

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AU - Oughtred, Rose

AU - Berman, Helen M.

AU - Westbrook, John

N1 - Funding Information: The RCSB PDB is operated by Rutgers, The State University of NewJersey; The San Diego Supercomputer Center at the University of California, San Diego; and the Center for Advanced Research in Biotechnology of the National Institute of Standards and Technology—three members of the Research Collaboratory for Structural Bioinformatics (RCSB). The work reported in this paper has been supported by grants from the NSF, the DOE, and six units of the NIH: the NIGMS, NLM, NCI, NCRR, NIBIB and the NINDS.

PY - 2004/11/1

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N2 - Summary: TargetDB is a centralized target registration database that includes protein target data from the NIH structural genomics centers and a number of international sites. TargetDB, which is hosted by the Protein Data Bank (RCSB PDB), provides status information on target sequences and tracks their progress through the various stages of protein production and structure determination. A simple search form permits queries based on contributing site, target ID, protein name, sequence, status and other data. The progress of individual targets or entire structural genomics projects may be tracked overtime, and target data from all contributing centers may also be downloaded in the XML format.

AB - Summary: TargetDB is a centralized target registration database that includes protein target data from the NIH structural genomics centers and a number of international sites. TargetDB, which is hosted by the Protein Data Bank (RCSB PDB), provides status information on target sequences and tracks their progress through the various stages of protein production and structure determination. A simple search form permits queries based on contributing site, target ID, protein name, sequence, status and other data. The progress of individual targets or entire structural genomics projects may be tracked overtime, and target data from all contributing centers may also be downloaded in the XML format.

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TargetDB: A target registration database for structural genomics projects

Abstract

All Science Journal Classification (ASJC) codes

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