The ERN Cryo-EM Federated Instrument Pilot Project: Phase 1

Maureen Dougherty; Jason Kaelber; James von Oehsen; Morgan Ludwig; Kenneth Dalenberg; Jeremy Schafer; Michael Zink; Boyd Wilson; John Goodhue; Wolf Hey; D. Balamurugan

doi:10.1109/XLOOP56614.2022.00009

The ERN Cryo-EM Federated Instrument Pilot Project: Phase 1

Maureen Dougherty, Jason Kaelber, James von Oehsen, Morgan Ludwig, Kenneth Dalenberg, Jeremy Schafer, Michael Zink, Boyd Wilson, John Goodhue, Wolf Hey, D. Balamurugan

Institute for Quantitative Biomedicine (IQB)

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

The Ecosystem for Research Networking (ERN) CryoEM Remote Instrument Pilot Project was launched in response to feedback and survey data collected from hundreds of participants of the ERN series of NSF (OAC-2018927) funded community outreach events revealing that Structural Biology instrument driven science is being forced to transition from self-contained islands to federated wide-area internet accessible instruments. Its goal is to facilitate multi-institutional collaboration at the interface of computing and electron microscopy through the implementation of the ERN Federated OpenCI Lab's Instrument CI Cloudlet design. The conclusion will be a web-based portal leveraging federated access to the instrument, workflows utilizing edge computing in conjunction with cloud computing and real-time monitoring for experimental parameter adjustments and decisions. The intention is to foster team science and scientific innovation, with emphasis on under-represented and under-resourced institutions, through the democratization of these scientific instruments.

Original language	English (US)
Title of host publication	Proceedings of XLOOP 2022
Subtitle of host publication	4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis
Publisher	Institute of Electrical and Electronics Engineers Inc.
Pages	20-25
Number of pages	6
ISBN (Electronic)	9781665473606
DOIs	https://doi.org/10.1109/XLOOP56614.2022.00009
State	Published - 2022
Event	4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, XLOOP 2022 - Dallas, United States Duration: Nov 13 2022 → Nov 18 2022

Publication series

Name	Proceedings of XLOOP 2022: 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis

Conference

Conference	4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, XLOOP 2022
Country/Territory	United States
City	Dallas
Period	11/13/22 → 11/18/22

All Science Journal Classification (ASJC) codes

Artificial Intelligence
Computer Networks and Communications
Information Systems
Safety, Risk, Reliability and Quality
Modeling and Simulation

Keywords

Cloud Services
Core Facilities
Edge Computing
Federation
Research Computing

Access to Document

10.1109/XLOOP56614.2022.00009

Cite this

Dougherty, M., Kaelber, J., von Oehsen, J., Ludwig, M., Dalenberg, K., Schafer, J., Zink, M., Wilson, B., Goodhue, J., Hey, W., & Balamurugan, D. (2022). The ERN Cryo-EM Federated Instrument Pilot Project: Phase 1. In Proceedings of XLOOP 2022: 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis (pp. 20-25). (Proceedings of XLOOP 2022: 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/XLOOP56614.2022.00009

Dougherty, Maureen ; Kaelber, Jason ; von Oehsen, James et al. / The ERN Cryo-EM Federated Instrument Pilot Project : Phase 1. Proceedings of XLOOP 2022: 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., 2022. pp. 20-25 (Proceedings of XLOOP 2022: 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis).

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title = "The ERN Cryo-EM Federated Instrument Pilot Project: Phase 1",

abstract = "The Ecosystem for Research Networking (ERN) CryoEM Remote Instrument Pilot Project was launched in response to feedback and survey data collected from hundreds of participants of the ERN series of NSF (OAC-2018927) funded community outreach events revealing that Structural Biology instrument driven science is being forced to transition from self-contained islands to federated wide-area internet accessible instruments. Its goal is to facilitate multi-institutional collaboration at the interface of computing and electron microscopy through the implementation of the ERN Federated OpenCI Lab's Instrument CI Cloudlet design. The conclusion will be a web-based portal leveraging federated access to the instrument, workflows utilizing edge computing in conjunction with cloud computing and real-time monitoring for experimental parameter adjustments and decisions. The intention is to foster team science and scientific innovation, with emphasis on under-represented and under-resourced institutions, through the democratization of these scientific instruments.",

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author = "Maureen Dougherty and Jason Kaelber and {von Oehsen}, James and Morgan Ludwig and Kenneth Dalenberg and Jeremy Schafer and Michael Zink and Boyd Wilson and John Goodhue and Wolf Hey and D. Balamurugan",

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year = "2022",

doi = "10.1109/XLOOP56614.2022.00009",

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Dougherty, M, Kaelber, J, von Oehsen, J, Ludwig, M, Dalenberg, K, Schafer, J, Zink, M, Wilson, B, Goodhue, J, Hey, W & Balamurugan, D 2022, The ERN Cryo-EM Federated Instrument Pilot Project: Phase 1. in Proceedings of XLOOP 2022: 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis. Proceedings of XLOOP 2022: 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis, Institute of Electrical and Electronics Engineers Inc., pp. 20-25, 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, XLOOP 2022, Dallas, United States, 11/13/22. https://doi.org/10.1109/XLOOP56614.2022.00009

The ERN Cryo-EM Federated Instrument Pilot Project: Phase 1. / Dougherty, Maureen; Kaelber, Jason; von Oehsen, James et al.
Proceedings of XLOOP 2022: 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., 2022. p. 20-25 (Proceedings of XLOOP 2022: 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

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AU - Dougherty, Maureen

AU - Kaelber, Jason

AU - von Oehsen, James

AU - Ludwig, Morgan

AU - Dalenberg, Kenneth

AU - Schafer, Jeremy

AU - Zink, Michael

AU - Wilson, Boyd

AU - Goodhue, John

AU - Hey, Wolf

AU - Balamurugan, D.

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AB - The Ecosystem for Research Networking (ERN) CryoEM Remote Instrument Pilot Project was launched in response to feedback and survey data collected from hundreds of participants of the ERN series of NSF (OAC-2018927) funded community outreach events revealing that Structural Biology instrument driven science is being forced to transition from self-contained islands to federated wide-area internet accessible instruments. Its goal is to facilitate multi-institutional collaboration at the interface of computing and electron microscopy through the implementation of the ERN Federated OpenCI Lab's Instrument CI Cloudlet design. The conclusion will be a web-based portal leveraging federated access to the instrument, workflows utilizing edge computing in conjunction with cloud computing and real-time monitoring for experimental parameter adjustments and decisions. The intention is to foster team science and scientific innovation, with emphasis on under-represented and under-resourced institutions, through the democratization of these scientific instruments.

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M3 - Conference contribution

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Dougherty M, Kaelber J, von Oehsen J, Ludwig M, Dalenberg K, Schafer J et al. The ERN Cryo-EM Federated Instrument Pilot Project: Phase 1. In Proceedings of XLOOP 2022: 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc. 2022. p. 20-25. (Proceedings of XLOOP 2022: 4th Annual Workshop on Extreme-Scale Experiment-in-the-Loop Computing, Held in conjunction with SC 2022: The International Conference for High Performance Computing, Networking, Storage and Analysis). doi: 10.1109/XLOOP56614.2022.00009

The ERN Cryo-EM Federated Instrument Pilot Project: Phase 1

Abstract

Publication series

Conference

All Science Journal Classification (ASJC) codes

Keywords

Access to Document

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