The RCSB protein data bank: Integrative view of protein, gene and 3D structural information

Peter W. Rose; Andreas Prlić; Ali Altunkaya; Chunxiao Bi; Anthony R. Bradley; Cole H. Christie; Luigi Di Costanzo; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; Rachel Kramer Green; David S. Goodsell; Brian Hudson; Tara Kalro; Robert Lowe; Ezra Peisach; Christopher Randle; Alexander S. Rose; Chenghua Shao; Yi Ping Tao; Yana Valasatava; Maria Voigt; John Westbrook; Jesse Woo; Huangwang Yang; Jasmine Y. Young; Christine Zardecki; Helen Berman; Stephen K. Burley

The RCSB protein data bank: Integrative view of protein, gene and 3D structural information

Peter W. Rose, Andreas Prlić, Ali Altunkaya, Chunxiao Bi, Anthony R. Bradley, Cole H. Christie, Luigi Di Costanzo, Jose M. Duarte, Shuchismita Dutta, Zukang Feng, Rachel Kramer Green, David S. Goodsell, Brian Hudson, Tara Kalro, Robert Lowe, Ezra Peisach, Christopher Randle, Alexander S. Rose, Chenghua Shao, Yi Ping TaoYana Valasatava, Maria Voigt, John Westbrook, Jesse Woo, Huangwang Yang, Jasmine Y. Young, Christine Zardecki, Helen Berman, Stephen K. Burley

Research output: Contribution to journal › Article › peer-review

735 Scopus citations

Abstract

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, http://rcsb. org), the US data center for the global PDB archive, makes PDB data freely available to all users, from structural biologists to computational biologists and beyond. New tools and resources have been added to the RCSB PDB web portal in support of a 'Structural View of Biology.' Recent developments have improved the User experience, including the highspeed NGL Viewer that provides 3D molecular visualization in any web browser, improved support for data file download and enhanced organization of website pages for query, reporting and individual structure exploration. Structure validation information is now visible for all archival entries. PDB data have been integrated with external biological resources, including chromosomal position within the human genome; protein modifications; and metabolic pathways. PDB- 101 educational materials have been reorganized into a searchable website and expanded to include new features such as the Geis Digital Archive.

Original language	English (US)
Pages (from-to)	D271-D281
Journal	Nucleic acids research
Volume	45
Issue number	D1
State	Published - Jan 1 2017

All Science Journal Classification (ASJC) codes

Genetics

Cite this

Rose, P. W., Prlić, A., Altunkaya, A., Bi, C., Bradley, A. R., Christie, C. H., Di Costanzo, L., Duarte, J. M., Dutta, S., Feng, Z., Green, R. K., Goodsell, D. S., Hudson, B., Kalro, T., Lowe, R., Peisach, E., Randle, C., Rose, A. S., Shao, C., ... Burley, S. K. (2017). The RCSB protein data bank: Integrative view of protein, gene and 3D structural information. Nucleic acids research, 45(D1), D271-D281.

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title = "The RCSB protein data bank: Integrative view of protein, gene and 3D structural information",

abstract = "The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, http://rcsb. org), the US data center for the global PDB archive, makes PDB data freely available to all users, from structural biologists to computational biologists and beyond. New tools and resources have been added to the RCSB PDB web portal in support of a 'Structural View of Biology.' Recent developments have improved the User experience, including the highspeed NGL Viewer that provides 3D molecular visualization in any web browser, improved support for data file download and enhanced organization of website pages for query, reporting and individual structure exploration. Structure validation information is now visible for all archival entries. PDB data have been integrated with external biological resources, including chromosomal position within the human genome; protein modifications; and metabolic pathways. PDB- 101 educational materials have been reorganized into a searchable website and expanded to include new features such as the Geis Digital Archive.",

author = "Rose, {Peter W.} and Andreas Prli{\'c} and Ali Altunkaya and Chunxiao Bi and Bradley, {Anthony R.} and Christie, {Cole H.} and {Di Costanzo}, Luigi and Duarte, {Jose M.} and Shuchismita Dutta and Zukang Feng and Green, {Rachel Kramer} and Goodsell, {David S.} and Brian Hudson and Tara Kalro and Robert Lowe and Ezra Peisach and Christopher Randle and Rose, {Alexander S.} and Chenghua Shao and Tao, {Yi Ping} and Yana Valasatava and Maria Voigt and John Westbrook and Jesse Woo and Huangwang Yang and Young, {Jasmine Y.} and Christine Zardecki and Helen Berman and Burley, {Stephen K.}",

note = "Publisher Copyright: {\textcopyright} 2016 The Author(s).",

year = "2017",

month = jan,

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language = "English (US)",

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pages = "D271--D281",

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Rose, PW, Prlić, A, Altunkaya, A, Bi, C, Bradley, AR, Christie, CH, Di Costanzo, L, Duarte, JM, Dutta, S , Feng, Z, Green, RK, Goodsell, DS , Hudson, B, Kalro, T, Lowe, R, Peisach, E, Randle, C, Rose, AS, Shao, C, Tao, YP, Valasatava, Y, Voigt, M, Westbrook, J, Woo, J, Yang, H, Young, JY , Zardecki, C, Berman, H & Burley, SK 2017, 'The RCSB protein data bank: Integrative view of protein, gene and 3D structural information', Nucleic acids research, vol. 45, no. D1, pp. D271-D281.

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AU - Rose, Peter W.

AU - Prlić, Andreas

AU - Altunkaya, Ali

AU - Bi, Chunxiao

AU - Bradley, Anthony R.

AU - Christie, Cole H.

AU - Di Costanzo, Luigi

AU - Duarte, Jose M.

AU - Dutta, Shuchismita

AU - Feng, Zukang

AU - Green, Rachel Kramer

AU - Goodsell, David S.

AU - Hudson, Brian

AU - Kalro, Tara

AU - Lowe, Robert

AU - Peisach, Ezra

AU - Randle, Christopher

AU - Rose, Alexander S.

AU - Shao, Chenghua

AU - Tao, Yi Ping

AU - Valasatava, Yana

AU - Voigt, Maria

AU - Westbrook, John

AU - Woo, Jesse

AU - Yang, Huangwang

AU - Young, Jasmine Y.

AU - Zardecki, Christine

AU - Berman, Helen

AU - Burley, Stephen K.

PY - 2017/1/1

Y1 - 2017/1/1

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AB - The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, http://rcsb. org), the US data center for the global PDB archive, makes PDB data freely available to all users, from structural biologists to computational biologists and beyond. New tools and resources have been added to the RCSB PDB web portal in support of a 'Structural View of Biology.' Recent developments have improved the User experience, including the highspeed NGL Viewer that provides 3D molecular visualization in any web browser, improved support for data file download and enhanced organization of website pages for query, reporting and individual structure exploration. Structure validation information is now visible for all archival entries. PDB data have been integrated with external biological resources, including chromosomal position within the human genome; protein modifications; and metabolic pathways. PDB- 101 educational materials have been reorganized into a searchable website and expanded to include new features such as the Geis Digital Archive.

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M3 - Article

C2 - 27794042

AN - SCOPUS:85016111024

SN - 0305-1048

VL - 45

SP - D271-D281

JO - Nucleic acids research

JF - Nucleic acids research

IS - D1

ER -

The RCSB protein data bank: Integrative view of protein, gene and 3D structural information

Abstract

All Science Journal Classification (ASJC) codes

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