TY - JOUR
T1 - Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank
AU - Burley, Stephen K.
AU - Bhatt, Rusham
AU - Bhikadiya, Charmi
AU - Bi, Chunxiao
AU - Biester, Alison
AU - Biswas, Pratyoy
AU - Bittrich, Sebastian
AU - Blaumann, Santiago
AU - Brown, Ronald
AU - Chao, Henry
AU - Chithari, Vivek Reddy
AU - Craig, Paul A.
AU - Crichlow, Gregg V.
AU - Duarte, Jose M.
AU - Dutta, Shuchismita
AU - Feng, Zukang
AU - Flatt, Justin W.
AU - Ghosh, Sutapa
AU - Goodsell, David S.
AU - Green, Rachel Kramer
AU - Guranovic, Vladimir
AU - Henry, Jeremy
AU - Hudson, Brian P.
AU - Joy, Michael
AU - Kaelber, Jason T.
AU - Khokhriakov, Igor
AU - Lai, Jhih Siang
AU - Lawson, Catherine L.
AU - Liang, Yuhe
AU - Myers-Turnbull, Douglas
AU - Peisach, Ezra
AU - Persikova, Irina
AU - Piehl, Dennis W.
AU - Pingale, Aditya
AU - Rose, Yana
AU - Sagendorf, Jared
AU - Sali, Andrej
AU - Segura, Joan
AU - Sekharan, Monica
AU - Shao, Chenghua
AU - Smith, James
AU - Trumbull, Michael
AU - Vallat, Brinda
AU - Voigt, Maria
AU - Webb, Ben
AU - Whetstone, Shamara
AU - Wu-Wu, Amy
AU - Xing, Tongji
AU - Young, Jasmine Y.
AU - Zalevsky, Arthur
AU - Zardecki, Christine
N1 - Publisher Copyright:
© 2025 The Author(s) 2024. Published by Oxford University Press on behalf of Nucleic Acids Research.
PY - 2025/1/6
Y1 - 2025/1/6
N2 - The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, RCSB.org), the US Worldwide Protein Data Bank (wwPDB, wwPDB.org) data center for the global PDB archive, provides access to the PDB data via its RCSB.org research-focused web portal. We report substantial additions to the tools and visualization features available at RCSB.org, which now delivers more than 227000 experimentally determined atomic-level three-dimensional (3D) biostructures stored in the global PDB archive alongside more than 1 million Computed Structure Models (CSMs) of proteins (including models for human, model organisms, select human pathogens, crop plants and organisms important for addressing climate change). In addition to providing support for 3D structure motif searches with user-provided coordinates, new features highlighted herein include query results organized by redundancy-reduced Groups and summary pages that facilitate exploration of groups of similar proteins. Newly released programmatic tools are also described, as are enhanced training opportunities.
AB - The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, RCSB.org), the US Worldwide Protein Data Bank (wwPDB, wwPDB.org) data center for the global PDB archive, provides access to the PDB data via its RCSB.org research-focused web portal. We report substantial additions to the tools and visualization features available at RCSB.org, which now delivers more than 227000 experimentally determined atomic-level three-dimensional (3D) biostructures stored in the global PDB archive alongside more than 1 million Computed Structure Models (CSMs) of proteins (including models for human, model organisms, select human pathogens, crop plants and organisms important for addressing climate change). In addition to providing support for 3D structure motif searches with user-provided coordinates, new features highlighted herein include query results organized by redundancy-reduced Groups and summary pages that facilitate exploration of groups of similar proteins. Newly released programmatic tools are also described, as are enhanced training opportunities.
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U2 - 10.1093/nar/gkae1091
DO - 10.1093/nar/gkae1091
M3 - Article
C2 - 39607707
AN - SCOPUS:85211269233
SN - 0305-1048
VL - 53
SP - D564-D574
JO - Nucleic acids research
JF - Nucleic acids research
IS - D1
ER -